PR #34 revision/expansion #1
HelenaLCr-universe.yaml
on: pull_request
R-universe testing
/
Build source pkg and vignettes
6m 13s
R-universe testing
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Build rOpenSci docs site
R-universe testing
/
Bioconductor Checks
4m 40s
Matrix: R-universe testing / linux
Matrix: R-universe testing / macos
Matrix: R-universe testing / wasm
Matrix: R-universe testing / windows
Annotations
8 errors and 3 notices
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R-universe testing / Build source pkg and vignettes:
SpatialData.plot#L0
Installation OK but failed to build vignettes
* creating vignettes ... ERROR
Setting r-universe rmarkdown theme...
--- re-building ‘SpatialData.plot.Rmd’ using rmarkdown
Loading required package: BiocStyle
Quitting from SpatialData.plot.Rmd:83-100 [plotLabel]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `plotLabel()`:
! could not find function "plotLabel"
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'SpatialData.plot.Rmd' failed with diagnostics:
could not find function "plotLabel"
--- failed re-building ‘SpatialData.plot.Rmd’
SUMMARY: processing the following file failed:
‘SpatialData.plot.Rmd’
Error: Vignette re-building failed.
Execution halted
If this is expected, consider precomputing your vignettes: https://ropensci.org/blog/2019/12/08/precompute-vignettes/
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R-universe testing / Build R-oldrel for Windows
Process completed with exit code 1.
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R-universe testing / Build R-oldrel for MacOS
Process completed with exit code 1.
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R-universe testing / Build R-release for MacOS:
SpatialData.plot#L0
Check: examples, Result: ERROR
Running examples in ‘SpatialData.plot-Ex.R’ failed
The error most likely occurred in:
> ### Name: plotLabel
> ### Title: 'SpatialData' label viz.
> ### Aliases: plotLabel
>
> ### ** Examples
>
> x <- system.file("extdata", "blobs.zarr", package="spatialdataR")
> x <- readSpatialData(x)
>
> i <- "blobs_labels"
> p <- plotSpatialData()
>
> # simple binary image
> p + plotLabel(x, i)
Error in plotLabel(x, i) : could not find function "plotLabel"
Execution halted
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R-universe testing / Build R-release for Windows:
SpatialData.plot#L0
Check: examples, Result: ERROR
Running examples in 'SpatialData.plot-Ex.R' failed
The error most likely occurred in:
> ### Name: plotLabel
> ### Title: 'SpatialData' label viz.
> ### Aliases: plotLabel
>
> ### ** Examples
>
> x <- system.file("extdata", "blobs.zarr", package="spatialdataR")
> x <- readSpatialData(x)
>
> i <- "blobs_labels"
> p <- plotSpatialData()
>
> # simple binary image
> p + plotLabel(x, i)
Error in plotLabel(x, i) : could not find function "plotLabel"
Execution halted
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R-universe testing / Build R-release for Linux:
SpatialData.plot#L0
Check: examples, Result: ERROR
Running examples in ‘SpatialData.plot-Ex.R’ failed
The error most likely occurred in:
> ### Name: plotLabel
> ### Title: 'SpatialData' label viz.
> ### Aliases: plotLabel
>
> ### ** Examples
>
> x <- system.file("extdata", "blobs.zarr", package="spatialdataR")
> x <- readSpatialData(x)
>
> i <- "blobs_labels"
> p <- plotSpatialData()
>
> # simple binary image
> p + plotLabel(x, i)
Error in plotLabel(x, i) : could not find function "plotLabel"
Execution halted
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R-universe testing / Build R-devel for Windows:
SpatialData.plot#L0
Check: examples, Result: ERROR
Running examples in 'SpatialData.plot-Ex.R' failed
The error most likely occurred in:
> ### Name: plotLabel
> ### Title: 'SpatialData' label viz.
> ### Aliases: plotLabel
>
> ### ** Examples
>
> x <- system.file("extdata", "blobs.zarr", package="spatialdataR")
> x <- readSpatialData(x)
>
> i <- "blobs_labels"
> p <- plotSpatialData()
>
> # simple binary image
> p + plotLabel(x, i)
Error in plotLabel(x, i) : could not find function "plotLabel"
Execution halted
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R-universe testing / Build R-devel for Linux:
SpatialData.plot#L0
Check: examples, Result: ERROR
Running examples in ‘SpatialData.plot-Ex.R’ failed
The error most likely occurred in:
> ### Name: plotLabel
> ### Title: 'SpatialData' label viz.
> ### Aliases: plotLabel
>
> ### ** Examples
>
> x <- system.file("extdata", "blobs.zarr", package="spatialdataR")
> x <- readSpatialData(x)
>
> i <- "blobs_labels"
> p <- plotSpatialData()
>
> # simple binary image
> p + plotLabel(x, i)
Error in plotLabel(x, i) : could not find function "plotLabel"
Execution halted
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R-universe testing / Build R-oldrel for Windows
NOTICE: windows-2025 requests are being redirected to windows-2025-vs2026 by June 15, 2026
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R-universe testing / Build R-release for Windows
NOTICE: windows-2025 requests are being redirected to windows-2025-vs2026 by June 15, 2026
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R-universe testing / Build R-devel for Windows
NOTICE: windows-2025 requests are being redirected to windows-2025-vs2026 by June 15, 2026
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bioc-checks
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3.65 KB |
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package-linux-devel-x86_64
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435 KB |
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435 KB |
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438 KB |
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