Hi authors,
Thank you for releasing the TextSAM-EUS code.
I am trying to reproduce the experiments. I requested access to the public Endoscopic Ultrasound Database of the Pancreas, and the folder I received has this structure:
Ecoendoscopy Database/
CANCER/
HEALTHY PANCREAS/
PANCREATITIS/
CLINICAL INFORMATION.csv
CLINICAL INFORMATION.xlsx
However, the TextSAM-EUS README expects:
data/EUS/
train/images/
train/masks/
val/images/
val/masks/
test/images/
test/masks/
The dataloader also appears to expect each image to have a corresponding same-name mask file.
Could you please clarify:
Where are the pixel-wise tumor masks located in the public database?
Is there a preprocessing/conversion script from the raw Ecoendoscopy Database folders to the images/ and masks/ structure?
Could you provide the patient-wise train/val/test split used in the paper?
Should the HEALTHY PANCREAS and PANCREATITIS folders be excluded for the tumor segmentation task, or used as all-background images?
This would be very helpful for reproducibility.
Thanks!
Hi authors,
Thank you for releasing the TextSAM-EUS code.
I am trying to reproduce the experiments. I requested access to the public Endoscopic Ultrasound Database of the Pancreas, and the folder I received has this structure: