Set ignore files

[TinasheMTapera]

bakepipe currently reads all R scripts:

✗ R 4.5.1> run()
+ script_tests_testthat_test_register_inputs_r dispatched
✔ script_tests_testthat_test_register_inputs_r completed [0ms, 1.04 kB]
+ script_r_utils_pipe_r dispatched
✔ script_r_utils_pipe_r completed [0ms, 363 B]
+
n_holylabs_cgolden_lab_lab_frontier_works_prospectors_prospectormahery_data_inputs_01_gold_mine_madagascar_cohort_data_zip_mahery_darwin_formatching_alluniquefoods_to_nutritional_equivalents2025feb1_xlsx
dispatched
✔ n_holylabs_cgolden_lab_lab_frontier_works_prospectors_prospectormahery_data_inputs_01_gold_mine_madagascar_cohort_data_zip_mahery_darwin_formatching_alluniquefoods_to_nutritional_equivalents2025feb1_xlsx completed [0ms, 514.71 kB]
+ script_pipeline_04_mah_hh_consumption_r dispatched
✔ script_pipeline_04_mah_hh_consumption_r completed [0ms, 20.25 kB]
+
n_holylabs_cgolden_lab_lab_frontier_works_prospectors_prospectormahery_data_inputs_01_gold_mine_madagascar_cohort_data_zip_fish_enc_17feb2025_csv
dispatched
✔ n_holylabs_cgolden_lab_lab_frontier_works_prospectors_prospectormahery_data_inputs_01_gold_mine_madagascar_cohort_data_zip_fish_enc_17feb2025_csv completed [0ms, 227.22 kB]
+
n_holylabs_cgolden_lab_lab_frontier_works_prospectors_prospectormahery_data_inputs_01_gold_mine_madagascar_cohort_data_zip_mah_hh_dietary_intake_csv
dispatched
✔ n_holylabs_cgolden_lab_lab_frontier_works_prospectors_prospectormahery_data_inputs_01_gold_mine_madagascar_cohort_data_zip_mah_hh_dietary_intake_csv completed [0ms, 84.03 MB]
+ script_pipeline_02_mah_hh_consumption_r dispatched
✔ script_pipeline_02_mah_hh_consumption_r completed [0ms, 20.25 kB]
+ script_r_prospectormahery_package_r dispatched
✔ script_r_prospectormahery_package_r completed [0ms, 93 B]
+ script_pipeline_01_mah_hh_consumption_r dispatched
✔ script_pipeline_01_mah_hh_consumption_r completed [0ms, 22.18 kB]
+ script_pipeline_03_mah_hh_consumption_r dispatched
✔ script_pipeline_03_mah_hh_consumption_r completed [0ms, 20.25 kB]
+ script_tests_testthat_r dispatched
✔ script_tests_testthat_r completed [1ms, 76 B]
+ script_sandbox_load_data_r dispatched
✔ script_sandbox_load_data_r completed [0ms, 2.06 kB]
+ script_rv_scripts_activate_r dispatched
✔ script_rv_scripts_activate_r completed [0ms, 2.39 kB]
+ script_pipeline_mah_hh_consumption_r dispatched
✔ script_pipeline_mah_hh_consumption_r completed [1ms, 20.00 kB]
+ script_rv_scripts_rvr_r dispatched
✔ script_rv_scripts_rvr_r completed [0ms, 861 B]
+
n_holylabs_cgolden_lab_lab_frontier_works_prospectors_prospectormahery_data_inputs_01_gold_mine_madagascar_cohort_data_zip_dar_hh_weekly_per_month_grams_categs_long_csv
dispatched
✔ n_holylabs_cgolden_lab_lab_frontier_works_prospectors_prospectormahery_data_inputs_01_gold_mine_madagascar_cohort_data_zip_dar_hh_weekly_per_month_grams_categs_long_csv completed [0ms, 6.92 MB]
+
n_holylabs_cgolden_lab_lab_frontier_works_prospectors_prospectormahery_data_inputs_01_gold_mine_madagascar_cohort_data_zip_mahery_metadata_xlsx
dispatched
✔ n_holylabs_cgolden_lab_lab_frontier_works_prospectors_prospectormahery_data_inputs_01_gold_mine_madagascar_cohort_data_zip_mahery_metadata_xlsx completed [1ms, 144.30 kB]
+ script_r_register_inputs_r dispatched
✔ script_r_register_inputs_r completed [0ms, 1.03 kB]
+ output_tests_testthat_test_register_inputs_r dispatched
✖ output_tests_testthat_test_register_inputs_r errored
✖ errored pipeline [2.1s, 18 completed, 0 skipped]
Error:
! Error in tar_make():
  ! ! in callr subprocess.
Caused by error in `test_that("register_inputs lists only matching files from input zip", …`:
! could not find function "test_that"
  See https://books.ropensci.org/targets/debugging.html

It should be able to ignore certain files or run from a different root other than the proj root