tecap/pyproject.toml at main · FullLengthFanatic/tecap · GitHub

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[build-system]
requires = ["hatchling>=1.18"]
build-backend = "hatchling.build"

[project]
name = "tecap"
version = "0.4.0"
description = "3' terminal exon capture diagnostics for long-read scRNA-seq"
readme = "README.md"
requires-python = ">=3.9"
license = {file = "LICENSE"}
authors = [
    {name = "Simone Picelli", email = "simone.picelli@iob.ch"},
]
keywords = ["scRNA-seq", "long-read", "PacBio", "ONT", "polyA", "internal-priming", "APA"]
classifiers = [
    "Development Status :: 3 - Alpha",
    "Intended Audience :: Science/Research",
    "License :: OSI Approved :: MIT License",
    "Operating System :: POSIX :: Linux",
    "Operating System :: MacOS",
    "Programming Language :: Python :: 3",
    "Programming Language :: Python :: 3.9",
    "Programming Language :: Python :: 3.10",
    "Programming Language :: Python :: 3.11",
    "Programming Language :: Python :: 3.12",
    "Topic :: Scientific/Engineering :: Bio-Informatics",
]
dependencies = [
    "pysam>=0.22",
    "intervaltree>=3.1",
    "matplotlib>=3.5",
    "numpy>=1.22",
]

[project.optional-dependencies]
dev = [
    "pytest>=7.0",
    "pytest-cov>=4.0",
    "ruff>=0.4",
]

[project.scripts]
tecap = "tecap.cli:main"

[project.urls]
Homepage = "https://github.com/FullLengthFanatic/tecap"
Issues = "https://github.com/FullLengthFanatic/tecap/issues"

[tool.hatch.build.targets.wheel]
packages = ["src/tecap"]

[tool.ruff]
line-length = 100
target-version = "py39"

[tool.ruff.lint]
select = ["E", "F", "W", "I", "UP", "B"]
ignore = ["E501"]

[tool.pytest.ini_options]
testpaths = ["tests"]
addopts = "-ra -q"