meta.yaml

{% set name = "multiomics" %}
{% set version = "0.1.0" %}

package:
  name: {{ name|lower }}
  version: {{ version }}

source:
  url: https://github.com/DilaDeniz/{{ name }}/archive/refs/tags/v{{ version }}.tar.gz
  sha256: 0000000000000000000000000000000000000000000000000000000000000000

build:
  number: 0
  skip: True  # [win]

requirements:
  build:
    - {{ compiler('rust') }}
    - {{ compiler('c') }}    # mimalloc needs a C compiler

test:
  commands:
    - multiomics --version | grep '{{ version }}'
    - multiomics --genomics "${SRC_DIR}/test_data/minimal.vcf"
                 --transcriptomics "${SRC_DIR}/test_data/minimal.tsv"
                 --epigenomics "${SRC_DIR}/test_data/minimal.bed"
                 --output "${TMPDIR}/multiomics_test"
                 --json

about:
  home: "https://github.com/DilaDeniz/{{ name }}"
  license: Apache-2.0
  license_file: LICENSE
  summary: "High-performance multi-omics analysis: VCF + TSV + BED → integrated HTML/JSON report."
  description: |
    Multiomics is a fast, multi-threaded tool for integrated analysis of
    VCF (genomics), TSV/BAM (transcriptomics), and BED (epigenomics) data
    simultaneously. It produces self-contained HTML reports, MultiQC-compatible
    JSON, pathway enrichment (KEGG/GMT), PCA, cross-modality correlation,
    CNV analysis, and a real-time terminal UI. Uses rayon parallel fold for
    lock-free multi-core processing.

extra:
  additional-platforms:
    - linux-aarch64
    - osx-arm64
  recipe-maintainers:
    - DilaDeniz
  skip-lints:
    - compiler_needs_stdlib_c