Thanks for releasing this method for multiome data analysis.
Is there any easy way to use ChromatinHD pred to get predictivity of a given locus with respect to a given gene, for a specific cell type? Right now, I could train individual cell type models, but that would not share information across cell types. I also see that chd.models.pred.interpret.GeneMultiWindow().score() leverages get_prediction_censored() and I could play with passing different cells to cell_ixs.
Please advise,
Kipper
Thanks for releasing this method for multiome data analysis.
Is there any easy way to use ChromatinHD pred to get predictivity of a given locus with respect to a given gene, for a specific cell type? Right now, I could train individual cell type models, but that would not share information across cell types. I also see that chd.models.pred.interpret.GeneMultiWindow().score() leverages get_prediction_censored() and I could play with passing different cells to
cell_ixs.Please advise,
Kipper