ci.yml

name: Unit tests

on:
  push:
    branches: [ master, dev ]
  pull_request:
    branches: [ master, dev ]

jobs:
  unittests:

    runs-on: ${{ matrix.os }}

    strategy:
      matrix:
        os:
          - ubuntu-latest
          - macos-latest
          - windows-latest
        python-version: ["3.9", "3.10", "3.11", "3.12", "3.13", "3.14"]
      fail-fast: true

    steps:
    - uses: actions/checkout@v2
    - name: Set up Python ${{ matrix.python-version }} on ${{ matrix.os }}
      uses: actions/setup-python@v2
      with:
        python-version: ${{ matrix.python-version }}
    - name: Install HDF5 (Linux)
      if: ${{ runner.os == 'Linux' }}
      run: |
        sudo apt-get update
        sudo apt-get install h5utils
    - name: Install HDF5 (Windows)
      if: ${{ runner.os == 'Windows' }}
      shell: pwsh
      run: |
        Try {h5diff.exe --version} Catch {
        Invoke-WebRequest -Uri "https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.7/bin/windows/hdf5-1.10.7-Std-win10_64-vs16.zip" -OutFile "${{ github.workspace }}\hdf.zip"
        unzip "${{ github.workspace }}\hdf.zip"
        Start-Process -FilePath msiexec.exe -ArgumentList /i, "${{ github.workspace }}\hdf\HDF5-1.10.7-win64.msi", /qn, /log, "${{ github.workspace }}\msi.log" -Wait
        Try { cat "${{ github.workspace }}\msi.log" } Catch { "log file not found" }
        echo "C:\Program Files\HDF_Group\HDF5\1.10.7\bin" | Out-File -FilePath $env:GITHUB_PATH -Encoding utf8 -Append
        rm "${{ github.workspace }}\hdf.zip"
        rm "${{ github.workspace }}\hdf\HDF5-1.10.7-win64.msi"
        rm "${{ github.workspace }}\msi.log"
        }
    - name: Install HDF5 and CVXOPT (macOS)
      if: ${{ runner.os == 'macOS' }}
      env:
        # see https://github.com/cvxopt/cvxopt/blob/master/.github/workflows/macos_build.yml
        CVXOPT_SUITESPARSE_LIB_DIR: /opt/homebrew/lib
        CVXOPT_SUITESPARSE_INC_DIR: /opt/homebrew/include/suitesparse
        CVXOPT_BLAS_LIB_DIR: /opt/homebrew/opt/openblas/lib
        CVXOPT_BLAS_LIB: openblas
        CVXOPT_LAPACK_LIB: openblas
        LDFLAGS: -L/opt/homebrew/opt/openblas/lib
        CPPFLAGS: -I/opt/homebrew/opt/openblas/include
      run: |
        brew --prefix
        brew install hdf5 openblas gsl fftw suite-sparse glpk
        python -m pip install --upgrade pip
        python -m pip install cvxopt
    - name: Install dependencies
      run: |
        python -m pip install --upgrade pip
        python -m pip install pytest
        python -m pip install .[roi]
    - name: Test with pytest
      run: >-
        pytest
        tests/test_core.py
        tests/test_analyzer.py