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660 lines (651 loc) · 34.5 KB
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[project]
name = "multipers"
version = "2.7.0b7"
description = "Multiparameter Topological Persistence for Machine Learning"
readme = "README.md"
authors = [
{ name = "David Loiseaux", email = "david.lapous@proton.me" },
{ name = "Hannah Schreiber", email = "hannah.schreiber@inria.fr"},
]
maintainers = [{ name = "David Loiseaux", email = "david.lapous@proton.me" }]
dependencies = [
#`import multipers`
"numpy",
"gudhi>=3.13", # Needs versioned SimplexTree serialization
"tqdm",
"scipy",
"joblib",
"matplotlib",
#`pytest multipers`
"scikit-learn",
"filtration-domination",
"pykeops",
"pot"
]
requires-python = ">=3.10"
license = "GPL-3.0-only"
license-files = [
"LICENSE",
"licenses/LGPL-3.0-or-later.txt",
"THIRD_PARTY_NOTICES.md",
]
classifiers = [
"Development Status :: 5 - Production/Stable",
"Programming Language :: Python :: 3.10",
"Programming Language :: Python :: 3.11",
"Programming Language :: Python :: 3.12",
"Programming Language :: Python :: 3.13",
"Programming Language :: Python :: 3.14",
"Programming Language :: Python :: Implementation :: CPython",
"Topic :: Scientific/Engineering :: Artificial Intelligence",
"Topic :: Scientific/Engineering :: Mathematics",
"Topic :: Scientific/Engineering :: Visualization",
"Topic :: Software Development :: Libraries :: Python Modules",
]
keywords = ["TDA", "Persistence", "Multiparameter", "sklearn", "autodiff"]
[build-system]
requires = [
"scikit-build-core>=0.12",
"numpy",
"nanobind",
]
build-backend = "scikit_build_core.build"
[tool.scikit-build]
minimum-version = "build-system.requires"
cmake.version = ">=3.27"
ninja.version = ">=1.11"
# cmake.build-type = "Release"
build-dir = "build/{wheel_tag}"
[tool.scikit-build.cmake.define]
CMAKE_COLOR_DIAGNOSTICS = "ON"
[tool.scikit-build.wheel]
packages = ["multipers"]
exclude = [
"**/*.pyx",
"**/*.pxd",
"**/*.tp",
"**/*.cpp",
"**/*.h",
"**/*.hpp",
"**/docs/**",
"**/benchmarks/**",
"**/ext/**",
]
[tool.scikit-build.sdist]
inclusion-mode = "manual"
exclude = [
"docs",
"tests",
"benchmarks/**",
"build",
"build*/**",
"dist",
"TODOs/**",
"chatty_tests/**",
"math/**",
"run_tests/**",
"**/__pycache__/**",
"multipers/__pycache__/**",
"**/*.ipynb",
"**/*.so",
"**/*.dylib",
"**/*.dll",
"**/*.pyd",
"generated",
"cython",
"CMakeFiles",
"multipers.egg-info",
"tmp",
"error_log.txt",
"AGENTS.md",
"multipers_old.py",
"test.py",
"*.sh",
"**/.DS_Store",
# scikit-build-core manual sdist mode is exclude-driven, not allowlist-driven.
# Exclude all vendored source first, then re-include the exact generated ext
# dependency closure in the include block below.
"ext/**",
"*.cff",
"*.bin",
"*.sky",
"*.sccsum",
"*.firep",
"*.pdf",
"*.js",
"*.css",
"*.map",
"*.md5",
"*.tex",
"*.scc",
"*.pyc",
"*.firep",
"CMakeCache.txt",
"compile_commands.json",
"Makefile",
"*.png",
".*",
"*.yml",
"cmake_install.cmake",
".DS_Store",
"*.tmp"
]
include = [
"CMakeLists.txt",
"cmake/**",
"multipers/tests",
"tools/tempita_grid_gen.py",
"tools/codegen/_registry.py",
"tools/codegen/query_config.py",
"tools/core/**",
# BEGIN GENERATED SDIST EXT INCLUDE
# Generated from `ninja -C build -t deps` plus config-only ext checks; update with
# `python tools/update_sdist_ext_whitelist.py --write`.
"ext/2pac/ArrayColumn.cpp",
"ext/2pac/ArrayColumn.hpp",
"ext/2pac/Cone.cpp",
"ext/2pac/Cone.hpp",
"ext/2pac/HeapColumn.cpp",
"ext/2pac/HeapColumn.hpp",
"ext/2pac/bireductions.cpp",
"ext/2pac/bireductions.hpp",
"ext/2pac/block_column_matrix.cpp",
"ext/2pac/block_column_matrix.hpp",
"ext/2pac/chunk.cpp",
"ext/2pac/chunk.hpp",
"ext/2pac/complexes.cpp",
"ext/2pac/complexes.hpp",
"ext/2pac/computation.cpp",
"ext/2pac/computation.hpp",
"ext/2pac/factor.cpp",
"ext/2pac/factor.hpp",
"ext/2pac/grade.hpp",
"ext/2pac/indirect.hpp",
"ext/2pac/lw.cpp",
"ext/2pac/lw.hpp",
"ext/2pac/matrices.cpp",
"ext/2pac/matrices.hpp",
"ext/2pac/minimize.cpp",
"ext/2pac/minimize.hpp",
"ext/2pac/priority_queue.hpp",
"ext/2pac/reductions.cpp",
"ext/2pac/reductions.hpp",
"ext/2pac/relative_cohomology.cpp",
"ext/2pac/relative_cohomology.hpp",
"ext/2pac/skip_vector.hpp",
"ext/2pac/time_measurement.cpp",
"ext/2pac/time_measurement.hpp",
"ext/2pac/typedefs.hpp",
"ext/2pac/utils.hpp",
"ext/AIDA/include/CLI11.hpp",
"ext/AIDA/include/aida_interface.hpp",
"ext/AIDA/include/config.hpp",
"ext/AIDA/include/option_parser.hpp",
"ext/AIDA/include/types.hpp",
"ext/AIDA/src/aida_decompose.cpp",
"ext/AIDA/src/aida_decompose.hpp",
"ext/AIDA/src/aida_functions.cpp",
"ext/AIDA/src/aida_functions.hpp",
"ext/AIDA/src/aida_helpers.cpp",
"ext/AIDA/src/aida_helpers.hpp",
"ext/AIDA/src/aida_interface.cpp",
"ext/AIDA/src/block.cpp",
"ext/AIDA/src/block.hpp",
"ext/AIDA/src/config.cpp",
"ext/AIDA/src/option_parser.cpp",
"ext/Persistence-Algebra/include/grlina/bitset_algebra.hpp",
"ext/Persistence-Algebra/include/grlina/column_types.hpp",
"ext/Persistence-Algebra/include/grlina/dense_matrix.hpp",
"ext/Persistence-Algebra/include/grlina/general.hpp",
"ext/Persistence-Algebra/include/grlina/graded_linalg.hpp",
"ext/Persistence-Algebra/include/grlina/graded_matrix.hpp",
"ext/Persistence-Algebra/include/grlina/grid_scheduler.hpp",
"ext/Persistence-Algebra/include/grlina/homomorphisms.hpp",
"ext/Persistence-Algebra/include/grlina/matrix_base.hpp",
"ext/Persistence-Algebra/include/grlina/orders_and_graphs.hpp",
"ext/Persistence-Algebra/include/grlina/r2graded_matrix.hpp",
"ext/Persistence-Algebra/include/grlina/r3graded_matrix.hpp",
"ext/Persistence-Algebra/include/grlina/sparse_matrix.hpp",
"ext/Persistence-Algebra/include/grlina/to_quiver.hpp",
"ext/Skyscraper-Invariant/include/file_reader.hpp",
"ext/Skyscraper-Invariant/include/filt_landscape.hpp",
"ext/Skyscraper-Invariant/include/hnf.hpp",
"ext/Skyscraper-Invariant/include/hnf_at.hpp",
"ext/Skyscraper-Invariant/include/hnf_interface.hpp",
"ext/Skyscraper-Invariant/include/hnf_uni_b1.hpp",
"ext/Skyscraper-Invariant/include/skyscraper_core.hpp",
"ext/Skyscraper-Invariant/include/stb_image_write.h",
"ext/Skyscraper-Invariant/include/subdivision.hpp",
"ext/Skyscraper-Invariant/include/uni_b1.hpp",
"ext/Skyscraper-Invariant/src/file_reader.cpp",
"ext/Skyscraper-Invariant/src/filt_landscape.cpp",
"ext/Skyscraper-Invariant/src/hnf.cpp",
"ext/Skyscraper-Invariant/src/hnf_at.cpp",
"ext/Skyscraper-Invariant/src/hnf_uni_b1.cpp",
"ext/Skyscraper-Invariant/src/skyscraper_core.cpp",
"ext/Skyscraper-Invariant/src/subdivision.cpp",
"ext/Skyscraper-Invariant/src/uni_b1.cpp",
"ext/deg_rips/include/deg_rips/Complex.h",
"ext/deg_rips/include/deg_rips/Edge_domination_checker.h",
"ext/deg_rips/include/deg_rips/Grade.h",
"ext/deg_rips/include/deg_rips/Vertex_domination_matrix.h",
"ext/deg_rips/include/deg_rips/basic.h",
"ext/deg_rips/include/deg_rips/boost_timers.h",
"ext/deg_rips/include/deg_rips/build_complex.h",
"ext/function_delaunay/include/function_delaunay/Delaunay_triangulation_accessors.h",
"ext/function_delaunay/include/function_delaunay/Grade_map.h",
"ext/function_delaunay/include/function_delaunay/Meb_accessors.h",
"ext/function_delaunay/include/function_delaunay/Miniball.hpp",
"ext/function_delaunay/include/function_delaunay/Point_with_densities.h",
"ext/function_delaunay/include/function_delaunay/boost_timers.h",
"ext/function_delaunay/include/function_delaunay/compute_meb_radii_of_simplex_tree.h",
"ext/function_delaunay/include/function_delaunay/count_size_of_delaunay_triangulation.h",
"ext/function_delaunay/include/function_delaunay/function_delaunay_with_meb.h",
"ext/function_delaunay/include/function_delaunay/get_simplices_from_triangulation.h",
"ext/function_delaunay/include/function_delaunay/mem_info.h",
"ext/function_delaunay/mpfree_mod/include/mpfree/Graded_matrix.h",
"ext/function_delaunay/mpfree_mod/include/mpfree/Grid_scheduler.h",
"ext/function_delaunay/mpfree_mod/include/mpfree/boost_timers.h",
"ext/function_delaunay/mpfree_mod/include/mpfree/global.h",
"ext/function_delaunay/mpfree_mod/include/mpfree/mpfree.h",
"ext/function_delaunay/mpfree_mod/include/mpfree/mpfree_subroutines.h",
"ext/function_delaunay/mpp_utils_mod/include/mpp_utils/Coordinate_traits_with_map.h",
"ext/function_delaunay/mpp_utils_mod/include/mpp_utils/Graded_matrix.h",
"ext/function_delaunay/mpp_utils_mod/include/mpp_utils/Graded_matrix_handle.h",
"ext/function_delaunay/mpp_utils_mod/include/mpp_utils/Pre_column_struct.h",
"ext/function_delaunay/mpp_utils_mod/include/mpp_utils/basic.h",
"ext/function_delaunay/mpp_utils_mod/include/mpp_utils/create_graded_matrices_from_pre_column_struct.h",
"ext/function_delaunay/mpp_utils_mod/include/mpp_utils/create_graded_matrices_from_scc2020.h",
"ext/function_delaunay/mpp_utils_mod/include/mpp_utils/create_graded_matrices_from_simplex_tree.h",
"ext/function_delaunay/mpp_utils_mod/include/mpp_utils/create_matrix_from_firep.h",
"ext/function_delaunay/mpp_utils_mod/include/mpp_utils/sorting_utility.h",
"ext/function_delaunay/multi_chunk_mod/include/multi_chunk/Graded_matrix.h",
"ext/function_delaunay/multi_chunk_mod/include/multi_chunk/basic.h",
"ext/function_delaunay/multi_chunk_mod/include/multi_chunk/boost_timers.h",
"ext/function_delaunay/multi_chunk_mod/include/multi_chunk/multi_chunk.h",
"ext/function_delaunay/phat/include/phat/algorithms/chunk_reduction.h",
"ext/function_delaunay/phat/include/phat/algorithms/row_reduction.h",
"ext/function_delaunay/phat/include/phat/algorithms/spectral_sequence_reduction.h",
"ext/function_delaunay/phat/include/phat/algorithms/standard_reduction.h",
"ext/function_delaunay/phat/include/phat/algorithms/twist_reduction.h",
"ext/function_delaunay/phat/include/phat/boundary_matrix.h",
"ext/function_delaunay/phat/include/phat/compute_persistence_pairs.h",
"ext/function_delaunay/phat/include/phat/helpers/dualize.h",
"ext/function_delaunay/phat/include/phat/helpers/misc.h",
"ext/function_delaunay/phat/include/phat/helpers/thread_local_storage.h",
"ext/function_delaunay/phat/include/phat/persistence_pairs.h",
"ext/function_delaunay/phat/include/phat/representations/Container_traits.h",
"ext/function_delaunay/phat/include/phat/representations/Pivot_representation.h",
"ext/function_delaunay/phat/include/phat/representations/Uniform_representation.h",
"ext/function_delaunay/phat/include/phat/representations/Unordered_map_container_traits.h",
"ext/function_delaunay/phat/include/phat/representations/bit_tree_pivot_column.h",
"ext/function_delaunay/phat/include/phat/representations/default_representations.h",
"ext/function_delaunay/phat/include/phat/representations/full_pivot_column.h",
"ext/function_delaunay/phat/include/phat/representations/heap_column_rep.h",
"ext/function_delaunay/phat/include/phat/representations/heap_pivot_column.h",
"ext/function_delaunay/phat/include/phat/representations/list_column_rep.h",
"ext/function_delaunay/phat/include/phat/representations/set_column_rep.h",
"ext/function_delaunay/phat/include/phat/representations/sparse_pivot_column.h",
"ext/function_delaunay/phat/include/phat/representations/vector_column_rep.h",
"ext/function_delaunay/scc_mod/include/scc/Column_data.h",
"ext/function_delaunay/scc_mod/include/scc/Scc.h",
"ext/function_delaunay/scc_mod/include/scc/basic.h",
"ext/graphcode/include/graphcode/Dynamic_boundary_matrix.h",
"ext/graphcode/include/graphcode/Graphcode.h",
"ext/graphcode/include/graphcode/Presentation_builder.h",
"ext/graphcode/include/graphcode/Vertex_relevance_checker.h",
"ext/graphcode/include/graphcode/boost_graph.h",
"ext/graphcode/include/graphcode/boost_timers.h",
"ext/graphcode/include/graphcode/determine_slice_values.h",
"ext/graphcode/include/graphcode/generators_relations.h",
"ext/graphcode/mpp_utils_mod/include/mpp_utils/Coordinate_traits_with_map.h",
"ext/graphcode/mpp_utils_mod/include/mpp_utils/Graded_matrix.h",
"ext/graphcode/mpp_utils_mod/include/mpp_utils/Graded_matrix_handle.h",
"ext/graphcode/mpp_utils_mod/include/mpp_utils/Pre_column_struct.h",
"ext/graphcode/mpp_utils_mod/include/mpp_utils/basic.h",
"ext/graphcode/mpp_utils_mod/include/mpp_utils/create_graded_matrices_from_pre_column_struct.h",
"ext/graphcode/mpp_utils_mod/include/mpp_utils/create_graded_matrices_from_scc2020.h",
"ext/graphcode/mpp_utils_mod/include/mpp_utils/create_graded_matrices_from_simplex_tree.h",
"ext/graphcode/mpp_utils_mod/include/mpp_utils/create_matrix_from_firep.h",
"ext/graphcode/mpp_utils_mod/include/mpp_utils/sorting_utility.h",
"ext/graphcode/phat_mod/include/phat/algorithms/twist_reduction.h",
"ext/graphcode/phat_mod/include/phat/boundary_matrix.h",
"ext/graphcode/phat_mod/include/phat/compute_persistence_pairs.h",
"ext/graphcode/phat_mod/include/phat/helpers/dualize.h",
"ext/graphcode/phat_mod/include/phat/helpers/misc.h",
"ext/graphcode/phat_mod/include/phat/helpers/thread_local_storage.h",
"ext/graphcode/phat_mod/include/phat/persistence_pairs.h",
"ext/graphcode/phat_mod/include/phat/representations/Container_traits.h",
"ext/graphcode/phat_mod/include/phat/representations/Pivot_representation.h",
"ext/graphcode/phat_mod/include/phat/representations/Uniform_representation.h",
"ext/graphcode/phat_mod/include/phat/representations/Unordered_map_container_traits.h",
"ext/graphcode/phat_mod/include/phat/representations/bit_tree_pivot_column.h",
"ext/graphcode/phat_mod/include/phat/representations/default_representations.h",
"ext/graphcode/phat_mod/include/phat/representations/full_pivot_column.h",
"ext/graphcode/phat_mod/include/phat/representations/heap_column_rep.h",
"ext/graphcode/phat_mod/include/phat/representations/heap_pivot_column.h",
"ext/graphcode/phat_mod/include/phat/representations/list_column_rep.h",
"ext/graphcode/phat_mod/include/phat/representations/set_column_rep.h",
"ext/graphcode/phat_mod/include/phat/representations/sparse_pivot_column.h",
"ext/graphcode/phat_mod/include/phat/representations/vector_column_rep.h",
"ext/gudhi-devel/src/Alpha_complex/include/gudhi/Alpha_complex.h",
"ext/gudhi-devel/src/Alpha_complex/include/gudhi/Alpha_complex/Alpha_kernel_d.h",
"ext/gudhi-devel/src/Bitmap_cubical_complex/include/gudhi/Bitmap_cubical_complex.h",
"ext/gudhi-devel/src/Bitmap_cubical_complex/include/gudhi/Bitmap_cubical_complex_base.h",
"ext/gudhi-devel/src/Bitmap_cubical_complex/include/gudhi/Bitmap_cubical_complex_periodic_boundary_conditions_base.h",
"ext/gudhi-devel/src/Collapse/include/gudhi/Flag_complex_edge_collapser.h",
"ext/gudhi-devel/src/Multi_filtration/include/gudhi/Degree_rips_bifiltration.h",
"ext/gudhi-devel/src/Multi_filtration/include/gudhi/Dynamic_multi_parameter_filtration.h",
"ext/gudhi-devel/src/Multi_filtration/include/gudhi/Multi_filtration/Multi_parameter_generator.h",
"ext/gudhi-devel/src/Multi_filtration/include/gudhi/Multi_filtration/multi_filtration_conversions.h",
"ext/gudhi-devel/src/Multi_filtration/include/gudhi/Multi_filtration/multi_filtration_products.h",
"ext/gudhi-devel/src/Multi_filtration/include/gudhi/Multi_filtration/multi_filtration_utils.h",
"ext/gudhi-devel/src/Multi_filtration/include/gudhi/Multi_parameter_filtration.h",
"ext/gudhi-devel/src/Multi_persistence/include/gudhi/Multi_parameter_filtered_complex.h",
"ext/gudhi-devel/src/Multi_persistence/include/gudhi/Multi_persistence/Box.h",
"ext/gudhi-devel/src/Multi_persistence/include/gudhi/Multi_persistence/Line.h",
"ext/gudhi-devel/src/Multi_persistence/include/gudhi/Multi_persistence/Module.h",
"ext/gudhi-devel/src/Multi_persistence/include/gudhi/Multi_persistence/Multi_parameter_filtered_complex_pcoh_interface.h",
"ext/gudhi-devel/src/Multi_persistence/include/gudhi/Multi_persistence/Persistence_interface_cohomology.h",
"ext/gudhi-devel/src/Multi_persistence/include/gudhi/Multi_persistence/Persistence_interface_homology.h",
"ext/gudhi-devel/src/Multi_persistence/include/gudhi/Multi_persistence/Persistence_interface_vineyard.h",
"ext/gudhi-devel/src/Multi_persistence/include/gudhi/Multi_persistence/Point.h",
"ext/gudhi-devel/src/Multi_persistence/include/gudhi/Multi_persistence/Summand.h",
"ext/gudhi-devel/src/Multi_persistence/include/gudhi/Multi_persistence/module_helpers.h",
"ext/gudhi-devel/src/Multi_persistence/include/gudhi/Multi_persistence/summand_helpers.h",
"ext/gudhi-devel/src/Multi_persistence/include/gudhi/Multi_persistence/utils.h",
"ext/gudhi-devel/src/Multi_persistence/include/gudhi/Projective_cover_kernel.h",
"ext/gudhi-devel/src/Multi_persistence/include/gudhi/Slicer.h",
"ext/gudhi-devel/src/Multi_persistence/include/gudhi/Thread_safe_slicer.h",
"ext/gudhi-devel/src/Multi_persistence/include/gudhi/multi_simplex_tree_helpers.h",
"ext/gudhi-devel/src/Multi_persistence/include/gudhi/slicer_helpers.h",
"ext/gudhi-devel/src/Multi_persistence/include/gudhi/multiparameter_module_approximation.h",
"ext/gudhi-devel/src/Persistence_matrix/include/gudhi/Fields/Z2_field_operators.h",
"ext/gudhi-devel/src/Persistence_matrix/include/gudhi/Fields/Zp_field_operators.h",
"ext/gudhi-devel/src/Persistence_matrix/include/gudhi/Matrix.h",
"ext/gudhi-devel/src/Persistence_matrix/include/gudhi/Persistence_matrix/Base_matrix.h",
"ext/gudhi-devel/src/Persistence_matrix/include/gudhi/Persistence_matrix/Base_matrix_with_column_compression.h",
"ext/gudhi-devel/src/Persistence_matrix/include/gudhi/Persistence_matrix/Boundary_matrix.h",
"ext/gudhi-devel/src/Persistence_matrix/include/gudhi/Persistence_matrix/Chain_matrix.h",
"ext/gudhi-devel/src/Persistence_matrix/include/gudhi/Persistence_matrix/Id_to_index_overlay.h",
"ext/gudhi-devel/src/Persistence_matrix/include/gudhi/Persistence_matrix/Position_to_index_overlay.h",
"ext/gudhi-devel/src/Persistence_matrix/include/gudhi/Persistence_matrix/RU_matrix.h",
"ext/gudhi-devel/src/Persistence_matrix/include/gudhi/Persistence_matrix/allocators/entry_constructors.h",
"ext/gudhi-devel/src/Persistence_matrix/include/gudhi/Persistence_matrix/base_pairing.h",
"ext/gudhi-devel/src/Persistence_matrix/include/gudhi/Persistence_matrix/base_swap.h",
"ext/gudhi-devel/src/Persistence_matrix/include/gudhi/Persistence_matrix/chain_pairing.h",
"ext/gudhi-devel/src/Persistence_matrix/include/gudhi/Persistence_matrix/chain_rep_cycles.h",
"ext/gudhi-devel/src/Persistence_matrix/include/gudhi/Persistence_matrix/chain_vine_swap.h",
"ext/gudhi-devel/src/Persistence_matrix/include/gudhi/Persistence_matrix/columns/chain_column_extra_properties.h",
"ext/gudhi-devel/src/Persistence_matrix/include/gudhi/Persistence_matrix/columns/column_dimension_holder.h",
"ext/gudhi-devel/src/Persistence_matrix/include/gudhi/Persistence_matrix/columns/column_utilities.h",
"ext/gudhi-devel/src/Persistence_matrix/include/gudhi/Persistence_matrix/columns/entry_types.h",
"ext/gudhi-devel/src/Persistence_matrix/include/gudhi/Persistence_matrix/columns/heap_column.h",
"ext/gudhi-devel/src/Persistence_matrix/include/gudhi/Persistence_matrix/columns/intrusive_list_column.h",
"ext/gudhi-devel/src/Persistence_matrix/include/gudhi/Persistence_matrix/columns/intrusive_set_column.h",
"ext/gudhi-devel/src/Persistence_matrix/include/gudhi/Persistence_matrix/columns/list_column.h",
"ext/gudhi-devel/src/Persistence_matrix/include/gudhi/Persistence_matrix/columns/naive_vector_column.h",
"ext/gudhi-devel/src/Persistence_matrix/include/gudhi/Persistence_matrix/columns/row_access.h",
"ext/gudhi-devel/src/Persistence_matrix/include/gudhi/Persistence_matrix/columns/set_column.h",
"ext/gudhi-devel/src/Persistence_matrix/include/gudhi/Persistence_matrix/columns/unordered_set_column.h",
"ext/gudhi-devel/src/Persistence_matrix/include/gudhi/Persistence_matrix/columns/vector_column.h",
"ext/gudhi-devel/src/Persistence_matrix/include/gudhi/Persistence_matrix/index_mapper.h",
"ext/gudhi-devel/src/Persistence_matrix/include/gudhi/Persistence_matrix/matrix_dimension_holders.h",
"ext/gudhi-devel/src/Persistence_matrix/include/gudhi/Persistence_matrix/matrix_row_access.h",
"ext/gudhi-devel/src/Persistence_matrix/include/gudhi/Persistence_matrix/ru_pairing.h",
"ext/gudhi-devel/src/Persistence_matrix/include/gudhi/Persistence_matrix/ru_rep_cycles.h",
"ext/gudhi-devel/src/Persistence_matrix/include/gudhi/Persistence_matrix/ru_vine_swap.h",
"ext/gudhi-devel/src/Persistence_matrix/include/gudhi/persistence_interval.h",
"ext/gudhi-devel/src/Persistence_matrix/include/gudhi/persistence_matrix_options.h",
"ext/gudhi-devel/src/Persistent_cohomology/include/gudhi/Persistent_cohomology.h",
"ext/gudhi-devel/src/Persistent_cohomology/include/gudhi/Persistent_cohomology/Field_Zp.h",
"ext/gudhi-devel/src/Persistent_cohomology/include/gudhi/Persistent_cohomology/Persistent_cohomology_column.h",
"ext/gudhi-devel/src/Simplex_tree/include/gudhi/Simplex_tree.h",
"ext/gudhi-devel/src/Simplex_tree/include/gudhi/Simplex_tree/Simplex_tree_iterators.h",
"ext/gudhi-devel/src/Simplex_tree/include/gudhi/Simplex_tree/Simplex_tree_node_explicit_storage.h",
"ext/gudhi-devel/src/Simplex_tree/include/gudhi/Simplex_tree/Simplex_tree_siblings.h",
"ext/gudhi-devel/src/Simplex_tree/include/gudhi/Simplex_tree/Simplex_tree_star_simplex_iterators.h",
"ext/gudhi-devel/src/Simplex_tree/include/gudhi/Simplex_tree/filtration_value_utils.h",
"ext/gudhi-devel/src/Simplex_tree/include/gudhi/Simplex_tree/hooks_simplex_base.h",
"ext/gudhi-devel/src/Simplex_tree/include/gudhi/Simplex_tree/indexing_tag.h",
"ext/gudhi-devel/src/Simplex_tree/include/gudhi/Simplex_tree/serialization_utils.h",
"ext/gudhi-devel/src/Simplex_tree/include/gudhi/Simplex_tree/simplex_tree_options.h",
"ext/gudhi-devel/src/Vineyard/include/gudhi/vineyard_base.h",
"ext/gudhi-devel/src/common/include/gudhi/Debug_utils.h",
"ext/gudhi-devel/src/common/include/gudhi/Off_reader.h",
"ext/gudhi-devel/src/common/include/gudhi/Points_off_io.h",
"ext/gudhi-devel/src/common/include/gudhi/Simple_object_pool.h",
"ext/gudhi-devel/src/common/include/gudhi/distance_functions.h",
"ext/gudhi-devel/src/common/include/gudhi/graph_simplicial_complex.h",
"ext/gudhi-devel/src/common/include/gudhi/reader_utils.h",
"ext/gudhi-devel/src/common/include/gudhi/simple_mdspan.h",
"ext/gudhi-devel/src/python/include/python_interfaces/numpy_utils.h",
"ext/gudhi-devel/src/python/include/python_interfaces/construction_utils.h",
"ext/hera/extern/phat/algorithms/standard_reduction.h",
"ext/hera/extern/phat/algorithms/twist_reduction.h",
"ext/hera/extern/phat/boundary_matrix.h",
"ext/hera/extern/phat/compute_persistence_pairs.h",
"ext/hera/extern/phat/helpers/dualize.h",
"ext/hera/extern/phat/helpers/misc.h",
"ext/hera/extern/phat/helpers/thread_local_storage.h",
"ext/hera/extern/phat/persistence_pairs.h",
"ext/hera/extern/phat/representations/abstract_pivot_column.h",
"ext/hera/extern/phat/representations/bit_tree_pivot_column.h",
"ext/hera/extern/phat/representations/vector_vector.h",
"ext/hera/include/hera/bottleneck.h",
"ext/hera/include/hera/bottleneck/basic_defs_bt.h",
"ext/hera/include/hera/bottleneck/bottleneck_detail.h",
"ext/hera/include/hera/bottleneck/bottleneck_detail.hpp",
"ext/hera/include/hera/bottleneck/bound_match.h",
"ext/hera/include/hera/bottleneck/bound_match.hpp",
"ext/hera/include/hera/bottleneck/def_debug_bt.h",
"ext/hera/include/hera/bottleneck/neighb_oracle.h",
"ext/hera/include/hera/common.h",
"ext/hera/include/hera/common/diagram_point.h",
"ext/hera/include/hera/common/diagram_reader.h",
"ext/hera/include/hera/common/diagram_traits.h",
"ext/hera/include/hera/common/hash_combine.h",
"ext/hera/include/hera/common/infinity.h",
"ext/hera/include/hera/common/point.h",
"ext/hera/include/hera/dnn/geometry/euclidean-dynamic.h",
"ext/hera/include/hera/dnn/geometry/euclidean-fixed.h",
"ext/hera/include/hera/dnn/local/kd-tree.h",
"ext/hera/include/hera/dnn/local/kd-tree.hpp",
"ext/hera/include/hera/dnn/local/search-functors.h",
"ext/hera/include/hera/dnn/parallel/tbb.h",
"ext/hera/include/hera/dnn/utils.h",
"ext/hera/include/hera/matching/bifiltration.h",
"ext/hera/include/hera/matching/bifiltration.hpp",
"ext/hera/include/hera/matching/box.h",
"ext/hera/include/hera/matching/box.hpp",
"ext/hera/include/hera/matching/cell_with_value.h",
"ext/hera/include/hera/matching/cell_with_value.hpp",
"ext/hera/include/hera/matching/common_defs.h",
"ext/hera/include/hera/matching/common_util.h",
"ext/hera/include/hera/matching/common_util.hpp",
"ext/hera/include/hera/matching/dual_box.h",
"ext/hera/include/hera/matching/dual_box.hpp",
"ext/hera/include/hera/matching/dual_point.h",
"ext/hera/include/hera/matching/dual_point.hpp",
"ext/hera/include/hera/matching/matching_distance.hpp",
"ext/hera/include/hera/matching/persistence_module.h",
"ext/hera/include/hera/matching/persistence_module.hpp",
"ext/hera/include/hera/matching/simplex.h",
"ext/hera/include/hera/matching/simplex.hpp",
"ext/hera/include/hera/matching_distance.h",
"ext/hera/include/hera/wasserstein.h",
"ext/hera/include/hera/wasserstein/auction_oracle.h",
"ext/hera/include/hera/wasserstein/auction_oracle_base.h",
"ext/hera/include/hera/wasserstein/auction_oracle_base.hpp",
"ext/hera/include/hera/wasserstein/auction_oracle_kdtree_restricted.h",
"ext/hera/include/hera/wasserstein/auction_oracle_kdtree_restricted.hpp",
"ext/hera/include/hera/wasserstein/auction_params.h",
"ext/hera/include/hera/wasserstein/auction_result.h",
"ext/hera/include/hera/wasserstein/auction_runner_gs.h",
"ext/hera/include/hera/wasserstein/auction_runner_gs.hpp",
"ext/hera/include/hera/wasserstein/auction_runner_jac.h",
"ext/hera/include/hera/wasserstein/auction_runner_jac.hpp",
"ext/hera/include/hera/wasserstein/basic_defs_ws.h",
"ext/hera/include/hera/wasserstein/basic_defs_ws.hpp",
"ext/hera/include/hera/wasserstein/def_debug_ws.h",
"ext/hera/include/hera/wasserstein/diagonal_heap.h",
"ext/mpfree/include/mpfree/Graded_matrix.h",
"ext/mpfree/include/mpfree/Grid_scheduler.h",
"ext/mpfree/include/mpfree/boost_timers.h",
"ext/mpfree/include/mpfree/global.h",
"ext/mpfree/include/mpfree/mpfree.h",
"ext/mpfree/include/mpfree/mpfree_subroutines.h",
"ext/mpfree/mpp_utils_mod/include/mpp_utils/Coordinate_traits_with_map.h",
"ext/mpfree/mpp_utils_mod/include/mpp_utils/Graded_matrix.h",
"ext/mpfree/mpp_utils_mod/include/mpp_utils/Graded_matrix_handle.h",
"ext/mpfree/mpp_utils_mod/include/mpp_utils/Pre_column_struct.h",
"ext/mpfree/mpp_utils_mod/include/mpp_utils/basic.h",
"ext/mpfree/mpp_utils_mod/include/mpp_utils/create_graded_matrices_from_pre_column_struct.h",
"ext/mpfree/mpp_utils_mod/include/mpp_utils/create_graded_matrices_from_scc2020.h",
"ext/mpfree/mpp_utils_mod/include/mpp_utils/create_graded_matrices_from_simplex_tree.h",
"ext/mpfree/mpp_utils_mod/include/mpp_utils/create_matrix_from_firep.h",
"ext/mpfree/mpp_utils_mod/include/mpp_utils/sorting_utility.h",
"ext/mpfree/phat_mod/include/phat/boundary_matrix.h",
"ext/mpfree/phat_mod/include/phat/helpers/misc.h",
"ext/mpfree/phat_mod/include/phat/helpers/thread_local_storage.h",
"ext/mpfree/phat_mod/include/phat/representations/Container_traits.h",
"ext/mpfree/phat_mod/include/phat/representations/Pivot_representation.h",
"ext/mpfree/phat_mod/include/phat/representations/Uniform_representation.h",
"ext/mpfree/phat_mod/include/phat/representations/Unordered_map_container_traits.h",
"ext/mpfree/phat_mod/include/phat/representations/bit_tree_pivot_column.h",
"ext/mpfree/phat_mod/include/phat/representations/default_representations.h",
"ext/mpfree/phat_mod/include/phat/representations/full_pivot_column.h",
"ext/mpfree/phat_mod/include/phat/representations/heap_column_rep.h",
"ext/mpfree/phat_mod/include/phat/representations/heap_pivot_column.h",
"ext/mpfree/phat_mod/include/phat/representations/list_column_rep.h",
"ext/mpfree/phat_mod/include/phat/representations/set_column_rep.h",
"ext/mpfree/phat_mod/include/phat/representations/sparse_pivot_column.h",
"ext/mpfree/phat_mod/include/phat/representations/vector_column_rep.h",
"ext/mpfree/scc_mod/include/scc/Column_data.h",
"ext/mpfree/scc_mod/include/scc/Scc.h",
"ext/mpfree/scc_mod/include/scc/basic.h",
"ext/multi_critical/include/multi_critical/Grade.h",
"ext/multi_critical/include/multi_critical/basic.h",
"ext/multi_critical/include/multi_critical/boost_timers.h",
"ext/multi_critical/include/multi_critical/firep.h",
"ext/multi_critical/include/multi_critical/free_resolution.h",
"ext/multi_critical/mpfree_mod/include/mpfree/Graded_matrix.h",
"ext/multi_critical/mpfree_mod/include/mpfree/Grid_scheduler.h",
"ext/multi_critical/mpfree_mod/include/mpfree/boost_timers.h",
"ext/multi_critical/mpfree_mod/include/mpfree/global.h",
"ext/multi_critical/mpfree_mod/include/mpfree/mpfree.h",
"ext/multi_critical/mpfree_mod/include/mpfree/mpfree_subroutines.h",
"ext/multi_critical/mpp_utils_mod/include/mpp_utils/Coordinate_traits_with_map.h",
"ext/multi_critical/mpp_utils_mod/include/mpp_utils/Graded_matrix.h",
"ext/multi_critical/mpp_utils_mod/include/mpp_utils/Graded_matrix_handle.h",
"ext/multi_critical/mpp_utils_mod/include/mpp_utils/Pre_column_struct.h",
"ext/multi_critical/mpp_utils_mod/include/mpp_utils/basic.h",
"ext/multi_critical/mpp_utils_mod/include/mpp_utils/create_graded_matrices_from_pre_column_struct.h",
"ext/multi_critical/mpp_utils_mod/include/mpp_utils/create_graded_matrices_from_scc2020.h",
"ext/multi_critical/mpp_utils_mod/include/mpp_utils/create_graded_matrices_from_simplex_tree.h",
"ext/multi_critical/mpp_utils_mod/include/mpp_utils/create_matrix_from_firep.h",
"ext/multi_critical/mpp_utils_mod/include/mpp_utils/sorting_utility.h",
"ext/multi_critical/multi_chunk_mod/include/multi_chunk/Graded_matrix.h",
"ext/multi_critical/multi_chunk_mod/include/multi_chunk/basic.h",
"ext/multi_critical/multi_chunk_mod/include/multi_chunk/boost_timers.h",
"ext/multi_critical/multi_chunk_mod/include/multi_chunk/multi_chunk.h",
"ext/multi_critical/phat_mod/include/phat/algorithms/chunk_reduction.h",
"ext/multi_critical/phat_mod/include/phat/algorithms/row_reduction.h",
"ext/multi_critical/phat_mod/include/phat/algorithms/spectral_sequence_reduction.h",
"ext/multi_critical/phat_mod/include/phat/algorithms/standard_reduction.h",
"ext/multi_critical/phat_mod/include/phat/algorithms/twist_reduction.h",
"ext/multi_critical/phat_mod/include/phat/boundary_matrix.h",
"ext/multi_critical/phat_mod/include/phat/compute_persistence_pairs.h",
"ext/multi_critical/phat_mod/include/phat/helpers/dualize.h",
"ext/multi_critical/phat_mod/include/phat/helpers/misc.h",
"ext/multi_critical/phat_mod/include/phat/helpers/thread_local_storage.h",
"ext/multi_critical/phat_mod/include/phat/persistence_pairs.h",
"ext/multi_critical/phat_mod/include/phat/representations/Container_traits.h",
"ext/multi_critical/phat_mod/include/phat/representations/Pivot_representation.h",
"ext/multi_critical/phat_mod/include/phat/representations/Uniform_representation.h",
"ext/multi_critical/phat_mod/include/phat/representations/Unordered_map_container_traits.h",
"ext/multi_critical/phat_mod/include/phat/representations/bit_tree_pivot_column.h",
"ext/multi_critical/phat_mod/include/phat/representations/default_representations.h",
"ext/multi_critical/phat_mod/include/phat/representations/full_pivot_column.h",
"ext/multi_critical/phat_mod/include/phat/representations/heap_column_rep.h",
"ext/multi_critical/phat_mod/include/phat/representations/heap_pivot_column.h",
"ext/multi_critical/phat_mod/include/phat/representations/list_column_rep.h",
"ext/multi_critical/phat_mod/include/phat/representations/set_column_rep.h",
"ext/multi_critical/phat_mod/include/phat/representations/sparse_pivot_column.h",
"ext/multi_critical/phat_mod/include/phat/representations/vector_column_rep.h",
"ext/multi_critical/scc_mod/include/scc/Column_data.h",
"ext/multi_critical/scc_mod/include/scc/Scc.h",
"ext/multi_critical/scc_mod/include/scc/basic.h",
"ext/muphasa/mph/IO.h",
"ext/muphasa/mph/column.h",
"ext/muphasa/mph/examples.h",
"ext/muphasa/mph/grade.h",
"ext/muphasa/mph/landscapes.h",
"ext/muphasa/mph/main.cpp",
"ext/muphasa/mph/main.h",
"ext/muphasa/mph/matrix.h",
"ext/muphasa/mph/signatureColumn.h",
"ext/muphasa/mph/utils.h",
"ext/patches/deg_rips_edge_copy_reducer.patch",
"ext/patches/function_delaunay_runtime_logs.patch",
"ext/patches/generate_ext_patches.py",
"ext/patches/mpfree_runtime_logs.patch",
"ext/patches/multi_critical_features.patch",
"ext/patches/multi_critical_runtime_logs.patch",
"ext/patches/muphasa_runtime_logs.patch",
"ext/phat/include/phat/representations/bit_tree_pivot_column.h",
"ext/rhomboidtiling_newer_cgal_version/src/bifiltration_cell.h",
"ext/rhomboidtiling_newer_cgal_version/src/cell_with_radius.h",
"ext/rhomboidtiling_newer_cgal_version/src/dimensional_traits_2.h",
"ext/rhomboidtiling_newer_cgal_version/src/dimensional_traits_3.h",
"ext/rhomboidtiling_newer_cgal_version/src/rhomboid.cpp",
"ext/rhomboidtiling_newer_cgal_version/src/rhomboid.h",
"ext/rhomboidtiling_newer_cgal_version/src/rhomboid_tiling.h",
"ext/rhomboidtiling_newer_cgal_version/src/rhomboid_tiling_impl.h",
"ext/rhomboidtiling_newer_cgal_version/src/rhomboid_with_radius.h",
"ext/rhomboidtiling_newer_cgal_version/src/types.h",
"ext/rhomboidtiling_newer_cgal_version/src/utils.cpp",
"ext/rhomboidtiling_newer_cgal_version/src/utils.h",
# Vendored license files kept in the sdist.
"ext/AIDA/LICENSE",
"ext/Persistence-Algebra/LICENSE",
"ext/Skyscraper-Invariant/LICENSE",
"ext/deg_rips/COPYING",
"ext/deg_rips/COPYING.LESSER",
"ext/function_delaunay/COPYING",
"ext/function_delaunay/phat/COPYING",
"ext/function_delaunay/phat/COPYING.LESSER",
"ext/graphcode/COPYING",
"ext/graphcode/phat_mod/COPYING",
"ext/graphcode/phat_mod/COPYING.LESSER",
"ext/gudhi-devel/LICENSE",
"ext/mpfree/COPYING",
"ext/mpfree/COPYING.LESSER",
"ext/mpfree/phat_mod/COPYING",
"ext/mpfree/phat_mod/COPYING.LESSER",
"ext/multi_critical/COPYING",
"ext/multi_critical/COPYING.LESSER",
"ext/multi_critical/phat_mod/COPYING",
"ext/multi_critical/phat_mod/COPYING.LESSER",
"ext/muphasa/LICENSE",
"ext/phat/COPYING",
"ext/phat/COPYING.LESSER",
# END GENERATED SDIST EXT INCLUDE
"options.py",
"multipers/**/*.hpp",
"multipers/**/*.h",
"multipers/graph_mph0/*.cpp",
"CITATION.cff",
"LICENSE",
"README.md",
"licenses/LGPL-3.0-or-later.txt",
"THIRD_PARTY_NOTICES.md",
]
[project.urls]
source = "https://github.com/DavidLapous/multipers"
download = "https://pypi.org/project/multipers/#files"
tracker = "https://github.com/DavidLapous/multipers/issues"
"release notes" = "https://github.com/DavidLapous/multipers/releases"
[tool.pytest.ini_options]
testpaths = ["tests", "chatty_tests"]
addopts = ["--import-mode=importlib"]