From 0f85b7724f0df6233c71859f631fd81c078c0c3a Mon Sep 17 00:00:00 2001 From: jbisits Date: Tue, 21 Jul 2026 09:56:50 +1000 Subject: [PATCH 1/4] Try a fix --- _cite/cite.py | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/_cite/cite.py b/_cite/cite.py index f51f2e0..5e434fc 100644 --- a/_cite/cite.py +++ b/_cite/cite.py @@ -200,10 +200,10 @@ # orcid source: filter by work type if work_type in ["journal-article", "preprint"]: citations.append(citation) - # else: - # # other sources: filter by publisher list - # if get_safe(citation, "publisher", "") in journals: - # citations.append(citation) + else: + # other sources: filter by publisher list + if get_safe(citation, "publisher", "") in journals: + citations.append(citation) log() From 8ff6abbe796c12052cf2f29e4003377b1d5cf3da Mon Sep 17 00:00:00 2001 From: jbisits Date: Tue, 21 Jul 2026 10:07:40 +1000 Subject: [PATCH 2/4] try type instead of type.value --- _cite/plugins/orcid.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/_cite/plugins/orcid.py b/_cite/plugins/orcid.py index 1518002..cca2009 100644 --- a/_cite/plugins/orcid.py +++ b/_cite/plugins/orcid.py @@ -75,7 +75,7 @@ def sort_id(_id): # get work type from summaries work_type = next( - (get_safe(s, "type.value", "") for s in summaries if get_safe(s, "type.value", "")), + (get_safe(s, "type", "") for s in summaries if get_safe(s, "type", "")), "" ) From 5b9198b50f09e63e28bd1ff19e6b6d1a16fd764b Mon Sep 17 00:00:00 2001 From: jbisits <75812103+jbisits@users.noreply.github.com> Date: Tue, 21 Jul 2026 00:08:14 +0000 Subject: [PATCH 3/4] Update citations --- _cite/.cache/cache.db | Bin 147456 -> 147456 bytes _data/citations.yaml | 1538 ++++++++++++++++++++++++++++++++++++++++- 2 files changed, 1537 insertions(+), 1 deletion(-) diff --git a/_cite/.cache/cache.db b/_cite/.cache/cache.db index 41bfb1a574a14b7011b9005ca7920997e42535f6..9f5fb0a3f7ba372c7a06cc0078c8f9285e6b5fa7 100644 GIT binary patch delta 431 zcmZXP&rZTX5XQR>CO|@!D1RiHN@9ZiX-k1KaQ5QCtI4KWs;q9iz;20nYCQM?`vks$ zhO2Ml8}Jl@6vQ~m9OnBn-^?$HQc;w8Us$N4tX|=4zt{!`22?y^p9c7jG7k&->}ipf zYbnFdmmDw?V$7)Yu)qqk`j?V$SP=F zAY=YxzS4UN~=vGdb>-w_e%7B5k5jAD@inpCSIOsoZdnL!;idjI06CUtTw2r~t z$Xj-&0PT(Vz{5%4GVJq#*Hmx4+?BnPw8L%bf4I%n_>0{*f;#f1lt{`0JmQR!S^cH| G+DG4`n}iYo delta 431 zcmZXP&rZTX5XQR>CX|FKQT|ATrTi<2fl9msXD=SSnrxb-%Ida7c1y%l=962-T_V`Ct3_J2 zsj!_ZHlUplkDN)Dc%C! zf{AFzIpNG>GL@--nONOh&x2*Ih1I9s!ezio>D&?K58bD93CyIBj$}eIDpChn!Fe5J z<{yW1Lw)rOR8otcb(#i@woBz@n6d1*RJ&ieY2~1c{?l43IsR76d^(y0eh`Z0F|;@G zmc5aOi;Z|6gcIN4#0!RQUA^_Qm$jXw9qy{}hud6@zu1){I79A~QON?Ij04W-48IIs G2k0B*nu78G diff --git a/_data/citations.yaml b/_data/citations.yaml index 275a699..805fdef 100644 --- a/_data/citations.yaml +++ b/_data/citations.yaml @@ -1,3 +1,1539 @@ # DO NOT EDIT, GENERATED AUTOMATICALLY -[] +- id: doi:10.1016/j.watres.2026.125686 + title: 'Swimming in urban estuaries: Understanding stormwater contamination events + and recovery from historical data' + authors: + - Simon D. Lloyd + - Josef I. Bisits + - Gordana Popovic + - Paul Osmond + - David J. Roser + - Stuart J. Khan + publisher: Water Research + date: '2026-06-01' + link: https://doi.org/hbsbzx + orcid: 0000-0002-6340-4470 + type: journal-article + plugin: orcid.py + file: orcid.yaml +- id: doi:10.1017/jfm.2025.349 + title: Cabbeling as a catalyst and driver of turbulent mixing + authors: + - Josef I. Bisits + - Jan D. Zika + - Taimoor Sohail + publisher: Journal of Fluid Mechanics + date: '2025-05-13' + link: https://doi.org/g9j37d + orcid: 0000-0003-3462-3559 + type: journal-article + plugin: sources.py + file: sources.yaml + image: https://static.cambridge.org//content/id/urn%3Acambridge.org%3Aid%3Aarticle%3AS0022112025003490/resource/name/optimisedImage-png-S0022112025003490_figAb.jpg +- id: doi:10.1175/JPO-D-24-0061.1 + title: Does Cabbeling Shape the Thermohaline Structure of High-Latitude Oceans? + authors: + - Josef I. Bisits + - Jan D. Zika + - Dafydd Gwyn Evans + publisher: Journal of Physical Oceanography + date: '2024-12-01' + link: https://doi.org/g8t62t + orcid: 0000-0002-6340-4470 + type: journal-article + plugin: orcid.py + file: orcid.yaml +- id: doi:10.1175/jpo-d-22-0145.1 + title: Can We Accurately Quantify a Lateral Diffusivity from a Single Tracer Release? + authors: + - Josef I. Bisits + - Geoffrey J. Stanley + - Jan D. Zika + publisher: Journal of Physical Oceanography + date: '2023-02-01' + link: https://doi.org/gr6msf + orcid: 0000-0003-3462-3559 + type: journal-article + plugin: sources.py + file: sources.yaml + image: https://journals.ametsoc.org/view/journals/phoc/53/2/full-JPO-D-22-0145.1-f2.jpg +- id: doi:10.1175/aies-d-24-0089.1 + title: Mapping Ocean Salinity Data Using Gaussian Mixture Modeling + authors: + - "Ev\xE9a Piedagnel" + - Taimoor Sohail + - Jan D. Zika + publisher: Artificial Intelligence for the Earth Systems + date: '2025-07-01' + link: https://doi.org/g968t6 + orcid: 0000-0003-3462-3559 + type: journal-article + plugin: orcid.py + file: orcid.yaml +- id: doi:10.1088/1748-9326/adb31c + title: Decline of Antarctic Circumpolar Current due to polar ocean freshening + authors: + - Taimoor Sohail + - Bishakhdatta Gayen + - Andreas Klocker + publisher: Environmental Research Letters + date: '2025-03-01' + link: https://doi.org/g86t6n + orcid: 0000-0002-4162-3269 + type: journal-article + plugin: sources.py + file: sources.yaml + image: https://content.cld.iop.org/journals/1748-9326/20/3/034046/revision2/erladb31cf5_lr.jpg +- id: doi:10.5194/essd-2024-545 + title: Global air-sea heat and freshwater fluxes constrained by ocean observations + authors: + - Taimoor Sohail + - Jan David Zika + publisher: Copernicus GmbH + date: '2025-01-13' + link: https://doi.org/g82zzb + orcid: 0000-0002-4162-3269 + type: preprint + plugin: orcid.py + file: orcid.yaml +- id: doi:10.5194/gmd-17-8049-2024 + title: An optimal transformation method for inferring ocean tracer sources and sinks + authors: + - Jan D. Zika + - Taimoor Sohail + publisher: Geoscientific Model Development + date: '2024-11-12' + link: https://doi.org/g8q23p + orcid: 0000-0002-4162-3269 + type: journal-article + plugin: sources.py + file: sources.yaml + image: https://gmd.copernicus.org/articles/17/8049/2024/gmd-17-8049-2024-avatar-web.png +- id: doi:10.22541/au.173016184.43617162/v1 + title: Mapping ocean salinity data using Gaussian Mixture Modeling + authors: + - "Ev\xE9a Piedagnel" + - Taimoor Sohail + - Jan D Zika + - Taimoor Sohail + - Jan Zika + publisher: Wiley + date: '2024-10-29' + link: https://doi.org/g8prx7 + orcid: 0000-0002-4162-3269 + type: preprint + plugin: orcid.py + file: orcid.yaml +- id: doi:10.1029/2022rg000781 + title: 'Closing the Loops on Southern Ocean Dynamics: From the Circumpolar Current + to Ice Shelves and From Bottom Mixing to Surface Waves' + authors: + - Luke G. Bennetts + - Callum J. Shakespeare + - Catherine A. Vreugdenhil + - Annie Foppert + - Bishakhdatta Gayen + - Amelie Meyer + - Adele K. Morrison + - Laurie Padman + - Helen E. Phillips + - Craig L. Stevens + - Alessandro Toffoli + - Navid C. Constantinou + - Jesse M. Cusack + - Ajitha Cyriac + - Edward W. Doddridge + - Matthew H. England + - D. Gwyn Evans + - Petra Heil + - Andrew McC. Hogg + - Ryan M. Holmes + - Wilma G. C. Huneke + - Nicole L. Jones + - Shane R. Keating + - Andrew E. Kiss + - Noa Kraitzman + - Alena Malyarenko + - Craig D. McConnochie + - Alberto Meucci + - Fabien Montiel + - Julia Neme + - Maxim Nikurashin + - Ramkrushnbhai S. Patel + - "Jen\u2010Ping Peng" + - Matthew Rayson + - Madelaine G. Rosevear + - Taimoor Sohail + - Paul Spence + - Geoffrey J. Stanley + publisher: Reviews of Geophysics + date: '2024-07-30' + link: https://doi.org/g8prx8 + orcid: 0000-0002-4162-3269 + type: journal-article + plugin: sources.py + file: sources.yaml + image: https://agupubs.onlinelibrary.wiley.com/cms/asset/edb9efe3-a8e7-4709-9a10-09f915689aa1/rog20349-fig-0002-m.jpg +- id: doi:10.5194/gmd-17-5987-2024 + title: An optimal transformation method applied to diagnose the ocean carbon budget + authors: + - Neill Mackay + - Taimoor Sohail + - Jan David Zika + - Richard G. Williams + - Oliver Andrews + - Andrew James Watson + publisher: Geoscientific Model Development + date: '2024-08-13' + link: https://doi.org/g72tv7 + orcid: 0000-0003-3462-3559 + type: journal-article + plugin: sources.py + file: sources.yaml + image: https://gmd.copernicus.org/articles/17/5987/2024/gmd-17-5987-2024-avatar-web.png +- id: doi:10.1175/jpo-d-23-0153.1 + title: Unsupervised Classification Identifies Warm, Fresh, and Dense Regimes of + the Antarctic Margins + authors: + - T. Sohail + - J. D. Zika + publisher: Journal of Physical Oceanography + date: '2024-06-01' + link: https://doi.org/g72tv9 + orcid: 0000-0003-3462-3559 + type: journal-article + plugin: sources.py + file: sources.yaml + image: https://journals.ametsoc.org/view/journals/phoc/54/6/full-JPO-D-23-0153.1-f1.jpg +- id: doi:10.1029/2023gl105374 + title: Anthropogenic Aerosols Offsetting Ocean Warming Less Efficiently Since the + 1980s + authors: + - Taimoor Sohail + - Damien B. Irving + - Jan D. Zika + - Jonathan M. Gregory + publisher: Geophysical Research Letters + date: '2023-12-02' + link: https://doi.org/gtkpwf + orcid: 0000-0003-3462-3559 + type: journal-article + plugin: sources.py + file: sources.yaml + image: https://agupubs.onlinelibrary.wiley.com/cms/asset/8b0f9f8a-f94d-45ba-b100-cafbb5c5f1b7/grl66752-fig-0001-m.jpg +- id: doi:10.1038/s41558-023-01817-y + title: Committed future ice-shelf melt + authors: + - Taimoor Sohail + publisher: Nature Climate Change + date: '2023-10-23' + link: https://doi.org/gtkpwg + orcid: 0000-0002-4162-3269 + type: journal-article + plugin: orcid.py + file: orcid.yaml +- id: doi:10.1175/jcli-d-22-0363.1 + title: Water-Mass Coordinates Isolate the Historical Ocean Warming Signal + authors: + - T. Sohail + - R. M. Holmes + - J.D. Zika + publisher: Journal of Climate + date: '2023-05-01' + link: https://doi.org/gr6zp6 + orcid: 0000-0003-3462-3559 + type: journal-article + plugin: sources.py + file: sources.yaml + image: https://journals.ametsoc.org/view/journals/clim/36/9/full-JCLI-D-22-0363.1-f2.jpg +- id: doi:10.1175/jcli-d-21-0695.1 + title: Adiabatic and Diabatic Signatures of Ocean Temperature Variability + authors: + - R. M. Holmes + - T. Sohail + - J. D. Zika + publisher: Journal of Climate + date: '2022-03-01' + link: https://doi.org/gr6zp7 + orcid: 0000-0003-3462-3559 + type: journal-article + plugin: sources.py + file: sources.yaml + image: https://journals.ametsoc.org/view/journals/clim/35/5/full-JCLI-D-21-0695.1-fA1.jpg +- id: doi:10.1038/s41586-021-04370-w + title: Observed poleward freshwater transport since 1970 + authors: + - Taimoor Sohail + - Jan D. Zika + - Damien B. Irving + - John A. Church + publisher: Nature + date: '2022-02-23' + link: https://doi.org/gpmgg4 + orcid: 0000-0003-3462-3559 + type: journal-article + plugin: sources.py + file: sources.yaml + image: https://media.springernature.com/full/springer-static/image/art%3A10.1038%2Fs41586-021-04370-w/MediaObjects/41586_2021_4370_Fig2_HTML.png?as=webp +- id: doi:10.1029/2020gl091439 + title: "Fifty Year Trends in Global Ocean Heat Content Traced to Surface Heat Fluxes\ + \ in the Sub\u2010Polar Ocean" + authors: + - Taimoor Sohail + - Damien B. Irving + - Jan D. Zika + - Ryan M. Holmes + - John A. Church + publisher: Geophysical Research Letters + date: '2021-04-24' + link: https://doi.org/gm5vzc + orcid: 0000-0003-3462-3559 + type: journal-article + plugin: sources.py + file: sources.yaml + image: https://agupubs.onlinelibrary.wiley.com/cms/asset/3900130c-c675-4b88-93a6-d1f3cc097d1c/grl62254-fig-0004-m.jpg +- id: doi:10.1029/2020GL089455 + title: Roles of Shear and Convection in Driving Mixing in the Ocean + authors: + - Gregory N. Ivey + - Cynthia E. Bluteau + - Bishakhdatta Gayen + - Nicole L. Jones + - Taimoor Sohail + publisher: Geophysical Research Letters + date: '2021-02-09' + link: https://doi.org/gr6zp8 + orcid: 0000-0002-4162-3269 + type: journal-article + plugin: sources.py + file: sources.yaml + image: https://agupubs.onlinelibrary.wiley.com/cms/asset/0c55a4b0-b3de-40e9-92a4-8d1b53ccadcb/grl61613-fig-0001-m.jpg +- id: doi:10.1175/jpo-d-19-0264.1 + title: The Dynamics of Mixed Layer Deepening during Open-Ocean Convection + authors: + - Taimoor Sohail + - Bishakhdatta Gayen + - Andrew McC. Hogg + publisher: Journal of Physical Oceanography + date: '2020-06-01' + link: https://doi.org/gr6zp9 + orcid: 0000-0002-4162-3269 + type: journal-article + plugin: sources.py + file: sources.yaml + image: https://journals.ametsoc.org/view/journals/phoc/50/6/full-JPO-D-19-0264.1-f1.jpg +- id: doi:10.1029/2018jc014883 + title: The Impact of Turbulence and Convection on Transport in the Southern Ocean + authors: + - Taimoor Sohail + - Catherine A. Vreugdenhil + - Bishakhdatta Gayen + - Andrew McC. Hogg + publisher: 'Journal of Geophysical Research: Oceans' + date: '2019-06-01' + link: https://doi.org/gr6zqb + orcid: 0000-0002-4162-3269 + type: journal-article + plugin: sources.py + file: sources.yaml + image: https://agupubs.onlinelibrary.wiley.com/cms/asset/8e6aeeeb-6fed-49fe-8c8a-6cc1caf0a86c/jgrc23463-fig-0001-m.jpg +- id: doi:10.1029/2018GL077711 + title: Convection Enhances Mixing in the Southern Ocean + authors: + - Taimoor Sohail + - Bishakhdatta Gayen + - Andrew McC. Hogg + publisher: Geophysical Research Letters + date: '2018-05-11' + link: https://doi.org/gdjx8s + orcid: 0000-0002-4162-3269 + type: journal-article + plugin: sources.py + file: sources.yaml + image: https://agupubs.onlinelibrary.wiley.com/cms/asset/bcdbbe4d-96ae-46f5-a0f0-def70c529fb0/grl57301-fig-0001-m.jpg +- id: doi:10.1098/rsta.2022.0056 + title: Southern ocean carbon and heat impact on climate + authors: + - "J. B. Sall\xE9e" + - E. P. Abrahamsen + - C. Allaigre + - M. Auger + - H. Ayres + - R. Badhe + - J. Boutin + - J. A. Brearley + - C. de Lavergne + - A. M. M. ten Doeschate + - E. S. Droste + - M. D. du Plessis + - D. Ferreira + - I. S. Giddy + - "B. G\xFClk" + - N. Gruber + - M. Hague + - M. Hoppema + - S. A. Josey + - T. Kanzow + - M. Kimmritz + - M. R. Lindeman + - P. J. Llanillo + - N. S. Lucas + - G. Madec + - D. P. Marshall + - A. J. S. Meijers + - M. P. Meredith + - M. Mohrmann + - P. M. S. Monteiro + - C. Mosneron Dupin + - K. Naeck + - A. Narayanan + - A. C. Naveira Garabato + - S-A. Nicholson + - A. Novellino + - "M. \xD6dalen" + - "S. \xD8sterhus" + - W. Park + - R. D. Patmore + - E. Piedagnel + - F. Roquet + - H. S. Rosenthal + - T. Roy + - R. Saurabh + - Y. Silvy + - T. Spira + - N. Steiger + - A. F. Styles + - S. Swart + - L. Vogt + - B. Ward + - S. Zhou + publisher: 'Philosophical Transactions of the Royal Society A: Mathematical, Physical + and Engineering Sciences' + date: '2023-05-08' + link: https://doi.org/gr8cph + orcid: 0000-0001-6677-6838 + type: journal-article + plugin: sources.py + file: sources.yaml + image: https://royalsocietypublishing.org/cms/asset/bb8669e8-9246-4a7b-be9a-734329364da3/rsta20220056f02.gif +- id: doi:10.21203/rs.3.rs-1929237/v1 + title: On Asymmetric Internal Hemispheric Variability in the Ocean in 2005-2015 + authors: + - Saurabh Rathore + - Nathaniel Bindoff + - Helen Philllips + - Ming Feng + publisher: Springer Science and Business Media LLC + date: '2022-08-11' + link: https://doi.org/gr6ztt + orcid: 0000-0001-6677-6838 + type: preprint + plugin: orcid.py + file: orcid.yaml +- id: doi:10.3389/fclim.2022.861477 + title: Interactions Between a Marine Heatwave and Tropical Cyclone Amphan in the + Bay of Bengal in 2020 + authors: + - Saurabh Rathore + - Rishav Goyal + - Babita Jangir + - Caroline C. Ummenhofer + - Ming Feng + - Mayank Mishra + publisher: Frontiers in Climate + date: '2022-06-07' + link: https://doi.org/gr6ztv + orcid: 0000-0001-6677-6838 + type: journal-article + plugin: sources.py + file: sources.yaml + image: https://www.frontiersin.org/files/Articles/861477/fclim-04-861477-HTML-r3/image_m/fclim-04-861477-g002.jpg +- id: doi:10.1175/jcli-d-20-0625.1 + title: Improving Australian Rainfall Prediction Using Sea Surface Salinity + authors: + - Saurabh Rathore + - Nathaniel L. Bindoff + - Caroline C. Ummenhofer + - Helen E. Phillips + - Ming Feng + - Mayank Mishra + publisher: Journal of Climate + date: '2021-04-01' + link: https://doi.org/gr6ztw + orcid: 0000-0001-6677-6838 + type: journal-article + plugin: sources.py + file: sources.yaml + image: https://journals.ametsoc.org/view/journals/clim/34/7/full-JCLI-D-20-0625.1-f9.jpg +- id: doi:10.1175/jcli-d-19-0579.1 + title: Near-Surface Salinity Reveals the Oceanic Sources of Moisture for Australian + Precipitation through Atmospheric Moisture Transport + authors: + - Saurabh Rathore + - Nathaniel L. Bindoff + - Caroline C. Ummenhofer + - Helen E. Phillips + - Ming Feng + publisher: Journal of Climate + date: '2020-08-01' + link: https://doi.org/gr6ztx + orcid: 0000-0001-6677-6838 + type: journal-article + plugin: sources.py + file: sources.yaml + image: https://journals.ametsoc.org/view/journals/clim/33/15/full-jcliD190579-f8.jpg +- id: doi:10.1038/s41467-020-15754-3 + title: Recent hemispheric asymmetry in global ocean warming induced by climate change + and internal variability + authors: + - Saurabh Rathore + - Nathaniel L. Bindoff + - Helen E. Phillips + - Ming Feng + publisher: Nature Communications + date: '2020-04-24' + link: https://doi.org/gnnpff + orcid: 0000-0001-6677-6838 + type: journal-article + plugin: sources.py + file: sources.yaml + image: https://media.springernature.com/full/springer-static/image/art%3A10.1038%2Fs41467-020-15754-3/MediaObjects/41467_2020_15754_Fig1_HTML.png?as=webp +- id: doi:10.1029/2025jc022445 + title: The Impact of Antarctic Sea Ice on Southern Ocean Water Mass Transformation + in Coupled Climate Models + authors: + - Zijin Chen + - William Hobbs + - Zanna Chase + - Jan Zika + publisher: 'Journal of Geophysical Research: Oceans' + date: '2025-09-01' + link: https://doi.org/g968t4 + orcid: 0000-0003-3462-3559 + type: journal-article + plugin: orcid.py + file: orcid.yaml +- id: doi:10.1029/2025gl116409 + title: "Observed Increase in Tropical Pacific Ocean Surface Cold\u2010Warm Contrast\ + \ Is Well Outside Model\u2010Simulated Range" + authors: + - Isabela Conde + - Jan Zika + - Ryan M. 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Rintoul + - Ole Richter + - Benjamin Keith Galton-Fenzi + - Jan D. Zika + - Violaine Pellichero + - Petteri Uotila + publisher: Frontiers in Marine Science + date: '2023-04-12' + link: https://doi.org/gtkpwn + orcid: 0000-0003-3462-3559 + type: journal-article + plugin: orcid.py + file: orcid.yaml +- id: doi:10.1175/jcli-d-22-0267.1 + title: Rectified Ocean Heat Uptake from Oscillatory Surface Forcing + authors: + - M. P. Pudig + - C. K. Yung + - J. D. Zika + - R. M. Holmes + publisher: Journal of Climate + date: '2023-04-15' + link: https://doi.org/gr6zss + orcid: 0000-0003-3462-3559 + type: journal-article + plugin: sources.py + file: sources.yaml + image: https://journals.ametsoc.org/view/journals/clim/36/8/inline-JCLI-D-22-0267.1-f1.jpg +- id: doi:10.1175/jcli-d-21-0793.1 + title: Mechanisms of Ocean Heat Uptake along and across Isopycnals + authors: + - "Louis Cl\xE9ment" + - E. L. McDonagh + - J. M. Gregory + - Q. Wu + - A. Marzocchi + - J. D. Zika + - A. J. G. 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Zika + publisher: Journal of Physical Oceanography + date: '2021-04-13' + link: https://doi.org/gr6zsx + orcid: 0000-0003-3462-3559 + type: journal-article + plugin: sources.py + file: sources.yaml + image: https://journals.ametsoc.org/view/journals/phoc/51/7/full-JPO-D-20-0212.1-f7.jpg +- id: doi:10.1175/jcli-d-20-0281.1 + title: A Mass and Energy Conservation Analysis of Drift in the CMIP6 Ensemble + authors: + - Damien Irving + - Will Hobbs + - John Church + - Jan Zika + publisher: Journal of Climate + date: '2021-04-01' + link: https://doi.org/gr6zs2 + orcid: 0000-0003-3462-3559 + type: journal-article + plugin: sources.py + file: sources.yaml + image: https://journals.ametsoc.org/view/journals/clim/34/8/full-JCLI-D-20-0281.1-f1.jpg +- id: doi:10.1007/s00382-020-05261-y + title: Changing water cycle and freshwater transports in the Atlantic Ocean in observations + and CMIP5 models + authors: + - Nikolaos Skliris + - Robert Marsh + - Jennifer V. Mecking + - Jan D. 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Zika + publisher: 'Philosophical Transactions of the Royal Society A: Mathematical, Physical + and Engineering Sciences' + date: '2017-08-07' + link: https://doi.org/gr6zs9 + orcid: 0000-0003-3462-3559 + type: journal-article + plugin: sources.py + file: sources.yaml + image: https://royalsocietypublishing.org/cms/asset/1bd8f99d-794c-4eb1-921d-8ecbdf30002d/rsta20160324f01.jpg +- id: doi:10.1175/BAMS-D-16-0057.1 + title: 'Overturning in the Subpolar North Atlantic Program: A New International + Ocean Observing System' + authors: + - M. Susan Lozier + - Sheldon Bacon + - Amy S. Bower + - Stuart A. Cunningham + - M. Femke de Jong + - Laura de Steur + - Brad deYoung + - "J\xFCrgen Fischer" + - Stefan F. Gary + - Blair J. W. Greenan + - Patrick Heimbach + - Naomi P. Holliday + - "Lo\xEFc Houpert" + - Mark E. Inall + - William E. Johns + - Helen L. Johnson + - Johannes Karstensen + - Feili Li + - Xiaopei Lin + - Neill Mackay + - David P. Marshall + - "Herl\xE9 Mercier" + - Paul G. 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D\xF6\xF6s" + publisher: Science + date: '2015-01-30' + link: https://doi.org/f3nmfb + orcid: 0000-0003-3462-3559 + type: journal-article + plugin: sources.py + file: sources.yaml + image: https://www.science.org/cms/10.1126/science.1257103/asset/89d84e1a-91d3-4c14-baff-7937af001b43/assets/graphic/347_540_f1.jpeg +- id: doi:10.1175/JCLI-D-15-0273.1 + title: "Maintenance and Broadening of the Ocean\u2019s Salinity Distribution by\ + \ the Water Cycle" + authors: + - Jan D. Zika + - Nikolaos Skliris + - A. J. George Nurser + - Simon A. Josey + - Lawrence Mudryk + - "Fr\xE9d\xE9ric Lalibert\xE9" + - Robert Marsh + publisher: Journal of Climate + date: '2015-12-15' + link: https://doi.org/f73bz4 + orcid: 0000-0003-3462-3559 + type: journal-article + plugin: sources.py + file: sources.yaml + image: https://journals.ametsoc.org/view/journals/clim/28/24/inline-jcli-d-15-0273.1-f1.jpg +- id: doi:10.1175/JPO-D-14-0053.1 + title: Sensitivity of Antarctic Circumpolar Current Transport and Eddy Activity + to Wind Patterns in the Southern Ocean + authors: + - Clothilde E. Langlais + - Stephen R. Rintoul + - Jan D. Zika + publisher: Journal of Physical Oceanography + date: '2015-04-01' + link: https://doi.org/f68qs8 + orcid: 0000-0003-3462-3559 + type: journal-article + plugin: sources.py + file: sources.yaml + image: https://journals.ametsoc.org/view/journals/phoc/45/4/inline-jpo-d-14-0053.1-f4.jpg +- id: doi:10.1175/JPO-D-14-0039.1 + title: A Thermohaline Inverse Method for Estimating Diathermohaline Circulation + and Mixing + authors: + - Sjoerd Groeskamp + - Jan D. Zika + - Bernadette M. Sloyan + - Trevor J. McDougall + - Peter C. McIntosh + publisher: Journal of Physical Oceanography + date: '2014-10-01' + link: https://doi.org/f6khjw + orcid: 0000-0003-3462-3559 + type: journal-article + plugin: sources.py + file: sources.yaml + image: https://journals.ametsoc.org/view/journals/phoc/44/10/inline-jpo-d-14-0039.1-f6.jpg +- id: doi:10.1007/s00382-013-1992-5 + title: 'Revisiting meridional overturing bistability using a minimal set of state + variables: stochastic theory' + authors: + - Willem P. Sijp + - Jan D. Zika + - "Marc d\u2019Orgeville" + - Matthew H. England + publisher: Climate Dynamics + date: '2013-11-19' + link: https://doi.org/f6ghht + orcid: 0000-0003-3462-3559 + type: journal-article + plugin: sources.py + file: sources.yaml + image: https://media.springernature.com/full/springer-static/image/art%3A10.1007%2Fs00382-013-1992-5/MediaObjects/382_2013_1992_Fig1_HTML.gif?as=webp +- id: doi:10.1175/JAS-D-13-0173.1 + title: The Atmospheric General Circulation in Thermodynamical Coordinates + authors: + - Joakim Kjellsson + - "Kristofer D\xF6\xF6s" + - "Fr\xE9d\xE9ric B. Lalibert\xE9" + - Jan D. Zika + publisher: Journal of the Atmospheric Sciences + date: '2014-02-27' + link: https://doi.org/f24ckr + orcid: 0000-0003-3462-3559 + type: journal-article + plugin: sources.py + file: sources.yaml + image: https://journals.ametsoc.org/view/journals/atsc/71/3/inline-jas-d-13-0173.1-f1.jpg +- id: doi:10.1002/2014JC010097 + title: The imprint of Southern Ocean overturning on seasonal water mass variability + in Drake Passage + authors: + - Dafydd Gwyn Evans + - Jan D. Zika + - Alberto C. Naveira Garabato + - A. J. George Nurser + publisher: 'Journal of Geophysical Research: Oceans' + date: '2014-11-01' + link: https://doi.org/gr6ztc + orcid: 0000-0003-3462-3559 + type: journal-article + plugin: sources.py + file: sources.yaml + image: https://agupubs.onlinelibrary.wiley.com/cms/asset/03bfc435-03ca-4fe5-9921-0f3a47e8e9a2/jgrc20971-fig-0003-m.jpg +- id: doi:10.1175/JPO-D-13-0213.1 + title: The Representation of Ocean Circulation and Variability in Thermodynamic + Coordinates + authors: + - Sjoerd Groeskamp + - Jan D. Zika + - Trevor J. McDougall + - Bernadette M. Sloyan + - "Fr\xE9d\xE9ric Lalibert\xE9" + publisher: Journal of Physical Oceanography + date: '2014-07-01' + link: https://doi.org/f59xtq + orcid: 0000-0003-3462-3559 + type: journal-article + plugin: sources.py + file: sources.yaml + image: https://journals.ametsoc.org/view/journals/phoc/44/7/inline-jpo-d-13-0213.1-f10.jpg +- id: doi:10.1175/JPO-D-13-091.1 + title: Acceleration of the Antarctic Circumpolar Current by Wind Stress along the + Coast of Antarctica + authors: + - Jan D. Zika + - Julien Le Sommer + - Carolina O. Dufour + - Alberto Naveira-Garabato + - Adam Blaker + publisher: Journal of Physical Oceanography + date: '2013-12-01' + link: https://doi.org/f5jjds + orcid: 0000-0003-3462-3559 + type: journal-article + plugin: sources.py + file: sources.yaml + image: https://journals.ametsoc.org/view/journals/phoc/43/12/full-jpo-d-13-091.1-f5.jpg +- id: doi:10.1175/JPO-D-12-0178.1 + title: Vertical Eddy Fluxes in the Southern Ocean + authors: + - Jan D. Zika + - Julien Le Sommer + - Carolina O. Dufour + - Jean-Marc Molines + - Bernard Barnier + - Pierre Brasseur + - "Rapha\xEBl Dussin" + - Thierry Penduff + - Daniele Iudicone + - Andrew Lenton + - Gurvan Madec + - Pierre Mathiot + - James Orr + - Emily Shuckburgh + - Frederic Vivier + publisher: Journal of Physical Oceanography + date: '2013-05-01' + link: https://doi.org/f4zhn4 + orcid: 0000-0003-3462-3559 + type: journal-article + plugin: sources.py + file: sources.yaml + image: https://journals.ametsoc.org/view/journals/phoc/43/5/inline-jpo-d-12-0178.1-f2.jpg +- id: doi:10.1175/JPO-D-12-0179.1 + title: Vertical Heat Transport by Ocean Circulation and the Role of Mechanical and + Haline Forcing + authors: + - Jan D. Zika + - Willem P. Sijp + - Matthew H. England + publisher: Journal of Physical Oceanography + date: '2013-10-01' + link: https://doi.org/gr6ztd + orcid: 0000-0003-3462-3559 + type: journal-article + plugin: sources.py + file: sources.yaml + image: https://journals.ametsoc.org/view/journals/phoc/43/10/inline-jpo-d-12-0179.1-f3.jpg +- title: 'The Ocean: A contour-wise view ' + publisher: Bulletin of the Australian Meteorological and Oceanographic Society + date: '2020-11-13' + link: https://issuu.com/amosadmin/docs/bulletin_vol_25_no.2_april_2012 + orcid: 0000-0003-3462-3559 + type: journal-article + plugin: orcid.py + file: orcid.yaml +- id: doi:10.1175/JCLI-D-11-00309.1 + title: Standing and Transient Eddies in the Response of the Southern Ocean Meridional + Overturning to the Southern Annular Mode + authors: + - C. O. Dufour + - J. Le Sommer + - J. D. Zika + - M. Gehlen + - J. C. Orr + - P. Mathiot + - B. Barnier + publisher: Journal of Climate + date: '2012-05-11' + link: https://doi.org/f4b9c2 + orcid: 0000-0003-3462-3559 + type: journal-article + plugin: sources.py + file: sources.yaml + image: https://journals.ametsoc.org/view/journals/clim/25/20/inline-jcli-d-11-00309.1-f1.jpg +- id: doi:10.1029/2012GL051004 + title: "Tasman leakage in a fine\u2010resolution ocean model" + authors: + - Erik van Sebille + - Matthew H. England + - Jan D. Zika + - Bernadette M. Sloyan + publisher: Geophysical Research Letters + date: '2012-03-24' + link: https://doi.org/gr6ztf + orcid: 0000-0003-3462-3559 + type: journal-article + plugin: sources.py + file: sources.yaml + image: https://agupubs.onlinelibrary.wiley.com/cms/asset/3763f7a6-ce23-471b-ac6e-a69577cd2bd9/grl29008-fig-0002.png +- id: doi:10.1175/JPO-D-11-0139.1 + title: The Ocean Circulation in Thermohaline Coordinates + authors: + - Jan D. Zika + - Matthew H. England + - Willem P. Sijp + publisher: Journal of Physical Oceanography + date: '2012-05-01' + link: https://doi.org/d2jwrk + orcid: 0000-0003-3462-3559 + type: journal-article + plugin: sources.py + file: sources.yaml + image: https://journals.ametsoc.org/view/journals/phoc/42/5/inline-jpo-d-11-0139.1-f8.jpg +- id: doi:10.1175/JCLI-D-11-00077.1 + title: Sea Level Expression of Intrinsic and Forced Ocean Variabilities at Interannual + Time Scales + authors: + - Thierry Penduff + - "M\xE9lanie Juza" + - Bernard Barnier + - Jan Zika + - William K. Dewar + - Anne-Marie Treguier + - Jean-Marc Molines + - Nicole Audiffren + publisher: Journal of Climate + date: '2011-11-01' + link: https://doi.org/fd9dxf + orcid: 0000-0003-3462-3559 + type: journal-article + plugin: sources.py + file: sources.yaml + image: https://journals.ametsoc.org/view/journals/clim/24/21/inline-jcli-d-11-00077.1-f9.jpg +- id: doi:10.1175/2009JPO4208.1 + title: A Tracer-Contour Inverse Method for Estimating Ocean Circulation and Mixing + authors: + - Jan D. Zika + - Trevor J. McDougall + - Bernadette M. Sloyan + publisher: Journal of Physical Oceanography + date: '2010-01-01' + link: https://doi.org/d96kck + orcid: 0000-0003-3462-3559 + type: journal-article + plugin: sources.py + file: sources.yaml + image: https://journals.ametsoc.org/view/journals/phoc/40/1/inline-i1520-0485-40-1-26-f02.jpg +- id: doi:10.1175/2010JPO4360.1 + title: 'Weak Mixing in the Eastern North Atlantic: An Application of the Tracer-Contour + Inverse Method' + authors: + - Jan D. Zika + - Trevor J. McDougall + - Bernadette M. Sloyan + publisher: Journal of Physical Oceanography + date: '2010-08-01' + link: https://doi.org/cxgpfj + orcid: 0000-0003-3462-3559 + type: journal-article + plugin: sources.py + file: sources.yaml + image: https://journals.ametsoc.org/view/journals/phoc/40/8/inline-i1520-0485-40-8-1881-f02.jpg +- id: doi:10.1175/2009JPO4052.1 + title: Diagnosing the Southern Ocean Overturning from Tracer Fields + authors: + - Jan D. Zika + - Bernadette M. Sloyan + - Trevor J. McDougall + publisher: Journal of Physical Oceanography + date: '2009-11-01' + link: https://doi.org/dq34km + orcid: 0000-0003-3462-3559 + type: journal-article + plugin: sources.py + file: sources.yaml + image: https://journals.ametsoc.org/view/journals/phoc/39/11/inline-i1520-0485-39-11-2926-f02.gif +- id: doi:10.1175/2007JPO3507.1 + title: Vertical and Lateral Mixing Processes Deduced from the Mediterranean Water + Signature in the North Atlantic + authors: + - Jan D. Zika + - Trevor J. McDougall + publisher: Journal of Physical Oceanography + date: '2008-01-01' + link: https://doi.org/dq42gm + orcid: 0000-0003-3462-3559 + type: journal-article + plugin: sources.py + file: sources.yaml + image: https://journals.ametsoc.org/view/journals/phoc/38/1/inline-i1520-0485-38-1-164-f01.gif From e2f96c00efea36665acefc1c0e1099409a10055b Mon Sep 17 00:00:00 2001 From: jbisits Date: Tue, 21 Jul 2026 10:12:34 +1000 Subject: [PATCH 4/4] comment indicating only for non-orcid citations --- _cite/cite.py | 2 ++ 1 file changed, 2 insertions(+) diff --git a/_cite/cite.py b/_cite/cite.py index 5e434fc..7d644c7 100644 --- a/_cite/cite.py +++ b/_cite/cite.py @@ -118,6 +118,8 @@ log("Generating citations") # List of Journals to include as publishers on the website +# this is only for when the citation is **not** retrieved from +# an ORCID id. journals = [ "Annual Review of Marine Science", "Bulletin of the American Meteorological Society",