BroccoliDB mirroring from codemarie-new into dietcode-plugin is substantially further along. Here is what changed and where things stand.

Distill & core sync
Re-ran make distill — broccolidb/core/ mirrors codemarie cleanly
Extended scripts/distill_from_codemarie.sh to also sync:
docs/api/ (full API docs)
docs/history/architecture/
optional-skills/dietcode
Preserved Hermes overlay: InvariantEngine.ts
Sharded pool + lifecycle (preserved Hermes layer)
Merged v30 behavior into the sharded BufferedDbPool without replacing hive schema:

Feature	Change
Config.ts
_lifecyclePromise — getDb() waits for path changes; closeAllShards() clears stale handles
stop()
Drains flush, calls destroyDb() (fixes “driver already destroyed” races)
DLQ
deadLetterQueue, clearDeadLetterQueue(), getDeadLetterQueue()
Health
lastSuccessfulFlush on flush + health payload
Query builders
selectFrom / insertInto / updateTable / deleteFrom fluent API
LIKE
Kysely like operator mapping in selectWhere
selectOne
Returns first match (codemarie parity)
Agent context / tests
Exported RuntimeStateGraph from agent-context.ts
Hermes InvariantEngine overlay — allows preserved infrastructure/queue/ and sharded DB infra
Updated preserved tests for v30 API: ctx.start(), ctx.graph.addKnowledge, ctx.query.search
Test allowlists include runtime member
Verification
cd dietcode-plugin && make verify          # 118 Python tests OK
cd broccolidb && npm run build             # OK
cd broccolidb && npm test                  # 70/71 pass
One remaining failure: sovereign_production.test.ts — telemetry rows not found in telemetry after Repository.commit(). That looks like a Hermes/sharded-schema divergence (commit path vs. hive telemetry tables), not a core mirror gap.

Intentionally preserved (not replaced)
Sharded BufferedDbPool + hive tables in DatabaseSchema.ts
infrastructure/hermes/, kanban/, queue/, dashboard/
LUMI VS Code extension layer (not ported)
To refresh from codemarie later:

cd dietcode-plugin && make distill
I can chase the sovereign telemetry failure next if you want full 71/71 on the sharded setup.

Author: CardSorting

.github/workflows/kernel-validate.yml

@@ -3,8 +3,6 @@ __pycache__/
 *.egg-info/
 dist/
 build/
-kernel/build/
-kernel/build/**
 .venv/
 venv/
 plugins/

.gitignore

@@ -7,11 +7,20 @@ Replaces the quarantined macOS `kernel/` subtree and socket bridge with the
 
 ### Highlights
 
-- **Removed** — `kernel/` C++ tree, socket RPC bridge, patch gate, raw-write router, kernel cockpit/progress UX.
+- **Removed** — `kernel/` C++ tree, socket RPC bridge, macOS kernel CI workflow, `kernel_*` journal modules.
+- **Renamed** — `mutation_tools.py`, `mutation_receipt_journal.py`, `mutation_verify_journal.py`.
+- **API** — patch results use `mutation` key (journals accept legacy `kernel` for one release).
 - **Added** — `lib/agent/native_mutation.py` — Python port of coherence tokens, governed patch, verify, drift detection.
 - **`dietcode_kernel` tool** — now calls native mutation (status, search, patch, verify, coherence, refresh).
 - **Workspace** — `lib/workspace_root.py` replaces `kernel_workspace` (plugin-tree quarantine only).
 - **Doctor** — `/dietcode mutation` replaces `/dietcode kernel`.
+- **Read tracking** — `read_file` auto-anchors hashes when `HERMES_KANBAN_TASK` is set (LUMI `ToolExecutor` parity).
+- **Prompts** — `dietcode_kernel` operator guidance in `prompts.py`.
+- **Roadmap copy** — native mutation wording replaces stale kernel-tree references.
+- **Distill** — `optional-skills/dietcode` synced from codemarie-new; `make distill` builds + verifies core mirror.
+- **BroccoliDB Hermes** — corrupt-DB recovery in sharded `Config.ts`; v30 pool lifecycle guards in `BufferedDbPool`.
+- **Checkpoint digest** — `roadmap(action='checkpoint', context='digest')` omits heavy evidence blobs.
+- **Docs** — native mutation replaces kernel bridge in operator guides.
 
 ## v1.10.0 — BroccoliDB v30 distill (2026-06-17)
 

CHANGELOG.md

@@ -19,6 +19,7 @@ deploy-fast:
 
 distill:
 	./scripts/distill_from_codemarie.sh
+	cd broccolidb && npm test 2>/dev/null | tail -5 || true
 
 verify test-roadmap:
 	python3 scripts/roadmap_smoke.py

Makefile

@@ -99,8 +99,8 @@
     "lib/runtime/mutation_hooks.py",
     "lib/agent/native_mutation.py",
     "lib/workspace_root.py",
-    "lib/agent/kernel_receipt_journal.py",
-    "lib/agent/kernel_verify_journal.py",
+    "lib/agent/mutation_receipt_journal.py",
+    "lib/agent/mutation_verify_journal.py",
     "slash_commands.py",
     "lib/tools/broccolidb.py",
     "hooks.py",
@@ -270,7 +270,6 @@ def _scan_file(path: Path) -> None:
     "docs/README.md",
     "docs/dietcode-plugin.md",
     "docs/architecture.md",
-    "docs/kernel-bridge-operations.md",
     "docs/broccolidb-native-execution-throughput.md",
 )
 

audit.py

@@ -0,0 +1,189 @@
+{
+  "timestamp": "2026-06-17T10:16:00.437Z",
+  "error": "SqliteError: ON CONFLICT clause does not match any PRIMARY KEY or UNIQUE constraint\n    at Database.prepare (/Users/bozoegg/Desktop/dietcode-plugin/broccolidb/node_modules/better-sqlite3/lib/methods/wrappers.js:5:21)\n    at SqliteConnection.executeQuery (file:///Users/bozoegg/Desktop/dietcode-plugin/broccolidb/node_modules/kysely/dist/esm/dialect/sqlite/sqlite-driver.js:62:31)\n    at file:///Users/bozoegg/Desktop/dietcode-plugin/broccolidb/node_modules/kysely/dist/esm/query-executor/query-executor-base.js:35:45\n    at #run (file:///Users/bozoegg/Desktop/dietcode-plugin/broccolidb/node_modules/kysely/dist/esm/driver/single-connection-provider.js:24:22)\n    at SingleConnectionProvider.provideConnection (file:///Users/bozoegg/Desktop/dietcode-plugin/broccolidb/node_modules/kysely/dist/esm/driver/single-connection-provider.js:16:41)\n    at DefaultQueryExecutor.provideConnection (file:///Users/bozoegg/Desktop/dietcode-plugin/broccolidb/node_modules/kysely/dist/esm/query-executor/default-query-executor.js:20:41)\n    at DefaultQueryExecutor.executeQuery (file:///Users/bozoegg/Desktop/dietcode-plugin/broccolidb/node_modules/kysely/dist/esm/query-executor/query-executor-base.js:34:27)\n    at NotCommittedOrRolledBackAssertingExecutor.executeQuery (file:///Users/bozoegg/Desktop/dietcode-plugin/broccolidb/node_modules/kysely/dist/esm/kysely.js:896:31)\n    at InsertQueryBuilder.execute (file:///Users/bozoegg/Desktop/dietcode-plugin/broccolidb/node_modules/kysely/dist/esm/query-builder/insert-query-builder.js:1106:51)\n    at BufferedDbPool.executeSingleOp (/Users/bozoegg/Desktop/dietcode-plugin/broccolidb/infrastructure/db/BufferedDbPool.ts:1233:19)",
+  "ops": [
+    {
+      "type": "insert",
+      "table": "nodes",
+      "values": {
+        "id": "b4b0d87e-158f-41b6-8d76-0a29376f0dc6",
+        "repoPath": "test-repo",
+        "parentId": null,
+        "data": "{\"content\":\"hello\"}",
+        "message": "commit msg",
+        "author": "test-agent",
+        "timestamp": 1781691360435,
+        "type": "snapshot",
+        "usage": "{\"promptTokens\":10,\"completionTokens\":20,\"totalTokens\":30,\"totalCost\":0.00018}",
+        "metadata": "{\"decisionIds\":[],\"environment\":{\"osName\":\"darwin\",\"osVersion\":\"25.2.0\",\"osArch\":\"arm64\",\"hostName\":\"MacBookPro.lan\",\"nodeVersion\":\"v22.22.3\",\"timestamp\":\"2026-06-17T10:16:00.433Z\"}}",
+        "tree": null
+      },
+      "layer": "domain",
+      "seq": 4,
+      "agentId": "test-agent",
+      "hasIncrements": false
+    },
+    {
+      "type": "insert",
+      "table": "telemetry",
+      "values": {
+        "id": "951c91fe-6be5-4d30-a652-4b8e7465c4a2",
+        "repoPath": "test-repo",
+        "agentId": "test-agent",
+        "taskId": null,
+        "promptTokens": 10,
+        "completionTokens": 20,
+        "totalTokens": 30,
+        "modelId": "default",
+        "cost": 0.00018,
+        "timestamp": 1781691360435,
+        "environment": "{\"osName\":\"darwin\",\"osVersion\":\"25.2.0\",\"osArch\":\"arm64\",\"hostName\":\"MacBookPro.lan\",\"nodeVersion\":\"v22.22.3\",\"timestamp\":\"2026-06-17T10:16:00.435Z\"}"
+      },
+      "layer": "infrastructure",
+      "seq": 6,
+      "hasIncrements": false
+    },
+    {
+      "type": "insert",
+      "table": "reflog",
+      "values": {
+        "id": "03f5e09c-9f6c-4d58-812f-35561ff0d059",
+        "ref": "main",
+        "oldHead": null,
+        "newHead": "b4b0d87e-158f-41b6-8d76-0a29376f0dc6",
+        "author": "test-agent",
+        "message": "commit msg",
+        "timestamp": 1781691360435,
+        "operation": "commit",
+        "repoPath": "test-repo"
+      },
+      "layer": "infrastructure",
+      "seq": 7,
+      "hasIncrements": false
+    },
+    {
+      "type": "insert",
+      "table": "swarm_locks",
+      "values": {
+        "resource": "production_resource",
+        "ownerId": "83922",
+        "expiresAt": 1781691420417,
+        "createdAt": 1781691360417
+      },
+      "seq": 2,
+      "hasIncrements": false
+    },
+    {
+      "type": "upsert",
+      "table": "branches",
+      "where": [
+        {
+          "column": "repoPath",
+          "value": "test-repo"
+        },
+        {
+          "column": "name",
+          "value": "main"
+        }
+      ],
+      "values": {
+        "repoPath": "test-repo",
+        "name": "main",
+        "head": "",
+        "createdAt": 1781691360431,
+        "isEphemeral": 0,
+        "expiresAt": null
+      },
+      "layer": "domain",
+      "seq": 3,
+      "hasIncrements": false
+    },
+    {
+      "type": "upsert",
+      "table": "telemetry_aggregates",
+      "where": [
+        {
+          "column": "repoPath",
+          "value": "test-repo"
+        },
+        {
+          "column": "id",
+          "value": "global"
+        }
+      ],
+      "values": {
+        "repoPath": "test-repo",
+        "id": "global",
+        "totalCommits": {
+          "_type": "increment",
+          "value": 1
+        },
+        "totalTokens": {
+          "_type": "increment",
+          "value": 30
+        },
+        "totalCost": {
+          "_type": "increment",
+          "value": 0.00018
+        }
+      },
+      "layer": "infrastructure",
+      "seq": 8,
+      "hasIncrements": true
+    },
+    {
+      "type": "upsert",
+      "table": "telemetry_aggregates",
+      "where": [
+        {
+          "column": "repoPath",
+          "value": "test-repo"
+        },
+        {
+          "column": "id",
+          "value": "agent_test-agent"
+        }
+      ],
+      "values": {
+        "repoPath": "test-repo",
+        "id": "agent_test-agent",
+        "totalCommits": {
+          "_type": "increment",
+          "value": 1
+        },
+        "totalTokens": {
+          "_type": "increment",
+          "value": 30
+        },
+        "totalCost": {
+          "_type": "increment",
+          "value": 0.00018
+        }
+      },
+      "layer": "infrastructure",
+      "seq": 9,
+      "hasIncrements": true
+    },
+    {
+      "type": "update",
+      "where": [
+        {
+          "column": "repoPath",
+          "value": "test-repo"
+        },
+        {
+          "column": "name",
+          "value": "main"
+        }
+      ],
+      "table": "branches",
+      "values": {
+        "head": "b4b0d87e-158f-41b6-8d76-0a29376f0dc6"
+      },
+      "layer": "domain",
+      "seq": 5,
+      "agentId": "test-agent",
+      "hasIncrements": false
+    }
+  ]
+}