_config.yml

# Welcome to Jekyll!
#
# This config file is meant for settings that affect your whole blog, values
# which you are expected to set up once and rarely need to edit after that.
# For technical reasons, this file is *NOT* reloaded automatically when you use
# 'jekyll serve'. If you change this file, please restart the server process.

# Site settings
title: CHRI
email: your-email@domain.com
description: > # this means to ignore newlines until "baseurl:"
  chri-lab Website.
url: https://chri-lab.github.io
baseurl:

include:
  - .htaccess
  - _pages

sass:
  sass_dir: _sass



# Conversion
markdown: kramdown
highlighter: rouge
lsi: false
excerpt_separator: "\n\n"
incremental: false

# Markdown Processing
kramdown:
  input: GFM
  hard_wrap: false
  auto_ids: true
  footnote_nr: 1
  entity_output: as_char
  toc_levels: 1..6
  smart_quotes: lsquo,rsquo,ldquo,rdquo
  enable_coderay: false
  parse_block_html: true # default for kramdown is false. This will enable using Markdown links

# Plug-ins
plugins:
  - jekyll-archives
  - jekyll-diagrams
  - jekyll-email-protect
  - jekyll-feed
  - jekyll-github-metadata
  - jekyll-imagemagick
  - jekyll-paginate-v2
  - jekyll/scholar
  - jekyll-sitemap
  - jekyll-target-blank
  - jekyll-twitter-plugin
  - jemoji

# Extras
github: [metadata]

# -----------------------------------------------------------------------------
# Jekyll Scholar
# -----------------------------------------------------------------------------

scholar:

  style: apa
  locale: en

  source: /_bibliography/
  bibliography: papers.bib
  bibliography_template: bib
  # Note: if you have latex math in your bibtex, the latex filter
  # preprocessing may conflict with MathJAX if the latter is enabled.
  # See https://github.com/alshedivat/al-folio/issues/357.
  bibtex_filters: [latex, smallcaps, superscript]

  replace_strings: true
  join_strings: true

  details_dir: bibliography
  details_layout: bibtex.html
  details_link: Details

  query: "@*"

  sort by: year, month
  order by: descending, ascending

  # -----------------------------------------------------------------------------
# Collections
# -----------------------------------------------------------------------------

collections:
  projects:
    output: true
    permalink: /projects/:path/
  papers:
    output: true
    permalink: /papers/:slug/


# -----------------------------------------------------------------------------
# Optional Features
# -----------------------------------------------------------------------------

enable_project_categories: true # enables categorization of projects into multiple categories


# -----------------------------------------------------------------------------
# Library versions
# -----------------------------------------------------------------------------

# Add the url, version and integrity hash of the libraries you use in your site.
third_party_libraries:
  download: false # if true, download the versions of the libraries specified below and use the downloaded files
  bootstrap-table:
    integrity:
      css: "sha256-uRX+PiRTR4ysKFRCykT8HLuRCub26LgXJZym3Yeom1c="
      js: "sha256-4rppopQE9POKfukn2kEvhJ9Um25Cf6+IDVkARD0xh78="
    url:
      css: "https://cdn.jsdelivr.net/npm/bootstrap-table@{{version}}/dist/bootstrap-table.min.css"
      js: "https://cdn.jsdelivr.net/npm/bootstrap-table@{{version}}/dist/bootstrap-table.min.js"
    version: "1.22.4"
  chartjs:
    url:
      js: "https://cdn.jsdelivr.net/npm/chart.js@{{version}}/dist/chart.umd.min.js"
    version: "4.4.1"
  d3:
    integrity:
      js: "sha256-1rA678n2xEx7x4cTZ5x4wpUCj6kUMZEZ5cxLSVSFWxw="
    url:
      js: "https://cdn.jsdelivr.net/npm/d3@{{version}}/dist/d3.min.js"
    version: "7.8.5"
  diff2html:
    integrity:
      css: "sha256-IMBK4VNZp0ivwefSn51bswdsrhk0HoMTLc2GqFHFBXg="
      js: "sha256-eU2TVHX633T1o/bTQp6iIJByYJEtZThhF9bKz/DcbbY="
    url:
      css: "https://cdn.jsdelivr.net/npm/diff2html@{{version}}/bundles/css/diff2html.min.css"
      js: "https://cdn.jsdelivr.net/npm/diff2html@{{version}}/bundles/js/diff2html-ui.min.js"
    version: "3.4.47"
  echarts:
    integrity:
      js:
        library: "sha256-QvgynZibb2U53SsVu98NggJXYqwRL7tg3FeyfXvPOUY="
        dark_theme: "sha256-sm6Ui9w41++ZCWmIWDLC18a6ki72FQpWDiYTDxEPXwU="
    url:
      js:
        library: "https://cdn.jsdelivr.net/npm/echarts@{{version}}/dist/echarts.min.js"
        dark_theme: "https://cdn.jsdelivr.net/npm/echarts@{{version}}/theme/dark-fresh-cut.js"
    version: "5.5.0"
  google_fonts:
    url:
      fonts: "https://fonts.googleapis.com/css?family=Roboto:300,400,500,700|Roboto+Slab:100,300,400,500,700|Material+Icons&display=swap"
  highlightjs:
    integrity:
      css:
        light: "sha256-Oppd74ucMR5a5Dq96FxjEzGF7tTw2fZ/6ksAqDCM8GY="
        dark: "sha256-nyCNAiECsdDHrr/s2OQsp5l9XeY2ZJ0rMepjCT2AkBk="
    url:
      css:
        light: "https://cdn.jsdelivr.net/npm/highlight.js@{{version}}/styles/github.min.css"
        dark: "https://cdn.jsdelivr.net/npm/highlight.js@{{version}}/styles/github-dark.min.css"
    version: "11.9.0"
  imagesloaded:
    integrity:
      js: "sha256-htrLFfZJ6v5udOG+3kNLINIKh2gvoKqwEhHYfTTMICc="
    url:
      js: https://cdn.jsdelivr.net/npm/imagesloaded@{{version}}/imagesloaded.pkgd.min.js
    version: "5.0.0"
  img-comparison-slider:
    url:
      css: "https://cdn.jsdelivr.net/npm/img-comparison-slider@{{version}}/dist/styles.min.css"
      js: "https://cdn.jsdelivr.net/npm/img-comparison-slider@{{version}}/dist/index.min.js"
    version: "8.0.6"
  jquery:
    integrity:
      js: "sha256-/xUj+3OJU5yExlq6GSYGSHk7tPXikynS7ogEvDej/m4="
    url:
      js: "https://cdn.jsdelivr.net/npm/jquery@{{version}}/dist/jquery.min.js"
    version: "3.6.0"
  leaflet:
    integrity:
      css: "sha256-p4NxAoJBhIIN+hmNHrzRCf9tD/miZyoHS5obTRR9BMY="
      js: "sha256-20nQCchB9co0qIjJZRGuk2/Z9VM+kNiyxNV1lvTlZBo="
      js_map: "sha256-YAoQ3FzREN4GmVENMir8vgHHypC0xfSK3CAxTHCqx1M="
    url:
      css: "https://cdn.jsdelivr.net/npm/leaflet@{{version}}/dist/leaflet.css"
      js: "https://cdn.jsdelivr.net/npm/leaflet@{{version}}/dist/leaflet.js"
      js_map: "https://cdn.jsdelivr.net/npm/leaflet@{{version}}/dist/leaflet.js.map"
    version: "1.9.4"
  mathjax:
    local:
      fonts: "output/chtml/fonts/woff-v2/"
    url:
      fonts: "https://cdn.jsdelivr.net/npm/mathjax@{{version}}/es5/output/chtml/fonts/woff-v2/"
      js: "https://cdn.jsdelivr.net/npm/mathjax@{{version}}/es5/tex-mml-chtml.min.js"
    version: "3.2.0"
  masonry:
    integrity:
      js: "sha256-Nn1q/fx0H7SNLZMQ5Hw5JLaTRZp0yILA/FRexe19VdI="
    url:
      js: "https://cdn.jsdelivr.net/npm/masonry-layout@{{version}}/dist/masonry.pkgd.min.js"
    version: "4.2.2"
  mdb:
    integrity:
      css: "sha256-jpjYvU3G3N6nrrBwXJoVEYI/0zw8htfFnhT9ljN3JJw="
      css_map: "sha256-iYYMNfsJdVZjvsebJulg09miBXM4/GMTJgv1u5EZFFM="
      js: "sha256-NdbiivsvWt7VYCt6hYNT3h/th9vSTL4EDWeGs5SN3DA="
      js_map: "sha256-UPgyn4YNsT0khkBK5553QwhnlbTlU0aa+igyc6qP1bE="
    url:
      css: "https://cdn.jsdelivr.net/npm/mdbootstrap@{{version}}/css/mdb.min.css"
      css_map: "https://cdn.jsdelivr.net/npm/mdbootstrap@{{version}}/css/mdb.min.css.map"
      js: "https://cdn.jsdelivr.net/npm/mdbootstrap@{{version}}/js/mdb.min.js"
      js_map: "https://cdn.jsdelivr.net/npm/mdbootstrap@{{version}}/js/mdb.min.js.map"
    version: "4.20.0"
  medium_zoom:
    integrity:
      js: "sha256-ZgMyDAIYDYGxbcpJcfUnYwNevG/xi9OHKaR/8GK+jWc="
    url:
      js: "https://cdn.jsdelivr.net/npm/medium-zoom@{{version}}/dist/medium-zoom.min.js"
    version: "1.1.0"
  mermaid:
    integrity:
      js: "sha256-TtLOdUA8mstPoO6sGvHIGx2ceXrrX4KgIItO06XOn8A="
    url:
      js: "https://cdn.jsdelivr.net/npm/mermaid@{{version}}/dist/mermaid.min.js"
    version: "10.7.0"
  polyfill:
    url:
      js: "https://cdnjs.cloudflare.com/polyfill/v{{version}}/polyfill.min.js?features=es6"
    version: "3"
  pseudocode:
    url:
      css: "https://cdn.jsdelivr.net/npm/pseudocode@{{version}}/build/pseudocode.min.css"
      js: "https://cdn.jsdelivr.net/npm/pseudocode@{{version}}/build/pseudocode.min.js"
    version: "2.4.1"
  swiper:
    integrity:
      css: "sha256-yUoNxsvX+Vo8Trj3lZ/Y5ZBf8HlBFsB6Xwm7rH75/9E="
      js: "sha256-BPrwikijIybg9OQC5SYFFqhBjERYOn97tCureFgYH1E="
    url:
      css: "https://cdn.jsdelivr.net/npm/swiper@{{version}}/swiper-bundle.min.css"
      js: "https://cdn.jsdelivr.net/npm/swiper@{{version}}/swiper-element-bundle.min.js"
    version: "11.0.5"
  swiper-map:
    integrity:
      js: "sha256-hlZaH8ySXX97bZaetnrtYlKuhx3oEXFz/s2IXchu6vk="
    url:
      js: "https://cdn.jsdelivr.net/npm/swiper@11.1.0/swiper-element-bundle.min.js.map"
    version: "11.0.5"
  vega:
    integrity:
      js: "sha256-Yot/cfgMMMpFwkp/5azR20Tfkt24PFqQ6IQS+80HIZs="
      js_map: "sha256-z0x9ICA65dPkZ0JVa9wTImfF6n7AJsKc6WlFE96/wNA="
    url:
      js: "https://cdn.jsdelivr.net/npm/vega@{{version}}/build/vega.min.js"
      js_map: "https://cdn.jsdelivr.net/npm/vega@{{version}}/build/vega.min.js.map"
    version: "5.27.0"
  vega-embed:
    integrity:
      js: "sha256-FPCJ9JYCC9AZSpvC/t/wHBX7ybueZhIqOMjpWqfl3DU="
      js_map: "sha256-VBbfSEFYSMdX/rTdGrONEHNP6BprCB7H/LpMMNt/cPA="
    url:
      js: "https://cdn.jsdelivr.net/npm/vega-embed@{{version}}/build/vega-embed.min.js"
      js_map: "https://cdn.jsdelivr.net/npm/vega-embed@{{version}}/build/vega-embed.min.js.map"
    version: "6.24.0"
  vega-lite:
    integrity:
      js: "sha256-TvBvIS5jUN4BSy009usRjNzjI1qRrHPYv7xVLJyjUyw="
      js_map: "sha256-l2I4D5JC23Ulsu6e3sKVe5AJ+r+DFkzkKnZS8nUGz28="
    url:
      js: "https://cdn.jsdelivr.net/npm/vega-lite@{{version}}/build/vega-lite.min.js"
      js_map: "https://cdn.jsdelivr.net/npm/vega-lite@{{version}}/build/vega-lite.min.js.map"
    version: "5.16.3"