Dependency Dashboard

[renovate]

This issue lists Renovate updates and detected dependencies. Read the Dependency Dashboard docs to learn more.
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Abandoned Dependencies

The following dependencies have not received updates for an extended period and may be unmaintained.

View abandoned dependencies (5)

[!NOTE]
Packages are marked as abandoned when they exceed the abandonmentThreshold since their last release. Unlike deprecated packages with official notices, abandonment is detected by release inactivity.

Datasource	Package	Last Updated
github-actions	hmarr/auto-approve-action	2024-02-03
pep621	flit_core	2025-03-25
pep621	sphinx-copybutton	2023-04-14
pep621	sphinxcontrib-contentui	2020-04-18
pep621	sphinxcontrib-details-directive	2019-09-22

Awaiting Schedule

The following updates are awaiting their schedule. To get an update now, click on a checkbox below.

• Update coverallsapp/github-action action to v2.3.8
• Update dependency python to v3.14.6
• Update actions/setup-python action to v6.3.0
• Update peter-evans/create-pull-request action to v8.1.1
• Update softprops/action-gh-release action to v2.6.2
• Update actions/checkout action to v7
• Update actions/setup-python action to v7
• Update docker/build-push-action action to v7
• Update docker/login-action action to v4
• Update docker/metadata-action action to v6
• Update docker/setup-buildx-action action to v4
• Update docker/setup-qemu-action action to v4
• Update softprops/action-gh-release action to v3
• Lock file maintenance
• 🔐 Create all awaiting schedule PRs at once 🔐

Detected Dependencies

github-actions (4)

.github/workflows/biosimdb_interface_project-ci.yaml (12)

• actions/checkout v6@d23441a48e516b6c34aea4fa41551a30e30af803 → [Updates: v7]
• actions/setup-python v6.1.0@83679a892e2d95755f2dac6acb0bfd1e9ac5d548 → [Updates: v6.3.0, v7.0.0]
• coverallsapp/github-action v2.3.7@5cbfd81b66ca5d10c19b062c04de0199c215fb6e → [Updates: v2.3.8]
• coverallsapp/github-action v2.3.7@5cbfd81b66ca5d10c19b062c04de0199c215fb6e → [Updates: v2.3.8]
• actions/checkout v6@d23441a48e516b6c34aea4fa41551a30e30af803 → [Updates: v7]
• actions/setup-python v6.1.0@83679a892e2d95755f2dac6acb0bfd1e9ac5d548 → [Updates: v6.3.0, v7.0.0]
• actions/checkout v6@d23441a48e516b6c34aea4fa41551a30e30af803 → [Updates: v7]
• actions/setup-python v6.1.0@83679a892e2d95755f2dac6acb0bfd1e9ac5d548 → [Updates: v6.3.0, v7.0.0]
• ubuntu 24.04
• python 3.14.0 → [Updates: 3.14.6]
• ubuntu 24.04
• python 3.14.0 → [Updates: 3.14.6]

.github/workflows/docker-publish.yaml (7)

• actions/checkout v4@11d5960a326750d5838078e36cf38b85af677262 → [Updates: v7]
• docker/setup-qemu-action v3@c7c53464625b32c7a7e944ae62b3e17d2b600130 → [Updates: v4]
• docker/setup-buildx-action v3@8d2750c68a42422c14e847fe6c8ac0403b4cbd6f → [Updates: v4]
• docker/login-action v3@c94ce9fb468520275223c153574b00df6fe4bcc9 → [Updates: v4]
• docker/metadata-action v5@c299e40c65443455700f0fdfc63efafe5b349051 → [Updates: v6]
• docker/build-push-action v6@10e90e3645eae34f1e60eeb005ba3a3d33f178e8 → [Updates: v7]
• ubuntu 24.04

.github/workflows/release.yaml (12)

• actions/checkout v6@d23441a48e516b6c34aea4fa41551a30e30af803 → [Updates: v7]
• actions/setup-python v6.1.0@83679a892e2d95755f2dac6acb0bfd1e9ac5d548 → [Updates: v6.3.0, v7.0.0]
• actions/checkout v6@d23441a48e516b6c34aea4fa41551a30e30af803 → [Updates: v7]
• peter-evans/create-pull-request v8.0.0@98357b18bf14b5342f975ff684046ec3b2a07725 → [Updates: v8.1.1]
• hmarr/auto-approve-action v4.0.0@f0939ea97e9205ef24d872e76833fa908a770363
• actions/checkout v6@d23441a48e516b6c34aea4fa41551a30e30af803 → [Updates: v7]
• softprops/action-gh-release v2.5.0@a06a81a03ee405af7f2048a818ed3f03bbf83c7b → [Updates: v2.6.2, v3.0.2]
• ubuntu 24.04
• python 3.14.0 → [Updates: 3.14.6]
• ubuntu 24.04
• ubuntu 24.04
• ubuntu 24.04

.github/workflows/update-copyright-years-in-license-file.yaml (2)

• actions/checkout v6@d23441a48e516b6c34aea4fa41551a30e30af803 → [Updates: v7]
• FantasticFiasco/action-update-license-year v3@f180e962fa988db222d8f03ef4636750312d1b3d

pep621 (1)

pyproject.toml (24)

• python >=3.12
• Flask ==3.1.3
• Werkzeug ==3.1.8
• data-collections-api ==0.1.0
• MDAnalysis ==2.10.0
• python-dotenv ==1.2.2
• gunicorn >=26,<27
• biosim-extractor >=0.0.2,<1.0
• pytest >=9.0,<10.0
• pytest-cov >=7.0,<8.0
• pytest-sugar >=1.1,<2.0
• pytest-mock ==3.15.1
• ruff >=0.14.8
• pre-commit >=4.5,<5.0
• pylint >=4.0,<5.0
• sphinx >=9,<10
• nbsphinx >=0.9,<1.0
• sphinx-rtd-theme >=3,<3.2
• sphinx-copybutton >=0.5,<1.0
• sphinxcontrib-contentui >=0.2,<1.0
• sphinxcontrib-details-directive >=0.1,<1.0
• furo >=2025.0,<2026.0
• markupsafe >=3.0,<4.0
• flit_core >=3.4,<4

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