Hi, I am trying to run correlationAnalyzeR using my own dataset. I managed to generate the correlations using the following command:
corrMat <- generateCorrelations(cts, transformed = T)
However, there is a connection error when running the following code:
corrMat = corrMat,
crossCompareMode = FALSE,
corrMat_label = "User-Supplied",
TERM2GENE = NULL)
Error message:
Warning in analyzeSingleGenes(genesOfInterest = c("CD68"), corrMat = corrMat, :
Failed to establish connection to database ... retrying now ... 3 attempts left.
Warning in analyzeSingleGenes(genesOfInterest = c("CD68"), corrMat = corrMat, :
Failed to establish connection to database ... retrying now ... 2 attempts left.
Error in analyzeSingleGenes(genesOfInterest = c("CD68"), corrMat = corrMat, :
Unable to connect to database. Check internet connection and please contanct package maintainer if you believe this is an error.
I checked the script and try to connect to the database, but it says unknown server host, as below:
conn <- try(silent = T, eval({
+ DBI::dbConnect(
+ drv = RMySQL::MySQL(),
+ user = "public-rds-user@m2600az-db01p.mysql.database.azure.com", port = 3306,
+ dbname="correlation_analyzer",
+ password='public-user-password',
+ host="m2600az-db01p.mysql.database.azure.com"
+ )
+ }))
> conn
[1] "Error in .local(drv, ...) : \n Failed to connect to database: Error: Unknown server host 'm2600az-db01p.mysql.database.azure.com' (11001)\n\n"
attr(,"class")
[1] "try-error"
attr(,"condition")
<simpleError in .local(drv, ...): Failed to connect to database: Error: Unknown server host 'm2600az-db01p.mysql.database.azure.com' (11001)
Does anyone have any suggestions or solution to this issue? Thank you very much!
Hi, I am trying to run correlationAnalyzeR using my own dataset. I managed to generate the correlations using the following command:
corrMat <- generateCorrelations(cts, transformed = T)However, there is a connection error when running the following code:
Error message:
I checked the script and try to connect to the database, but it says unknown server host, as below:
Does anyone have any suggestions or solution to this issue? Thank you very much!