HI there, I'm familiarising with your package through the vignette and already retting issues with the first line of code
to get biological process GO terms
TERM2GENE = getTERM2GENE(GSEA_Type = c("GO:BP")
it errors:
! Assigned data gsub(MDF$gs_subcat, pattern = "CP:", replacement = "", perl = TRUE) must be compatible with existing data.
✖ Existing data has 4475391 rows.
✖ Assigned data has 0 rows.
ℹ Only vectors of size 1 are recycled.
Caused by error in vectbl_recycle_rhs_rows():
! Can't recycle input of size 0 to size 4475391.
Warning message:
Unknown or uninitialised column: gs_subcat.
Please advise how to fix this error.
r$> sessionInfo()
R version 4.4.0 (2024-04-24)
Platform: x86_64-apple-darwin20
Running under: macOS Big Sur ... 10.16
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] correlationAnalyzeR_1.0.0
HI there, I'm familiarising with your package through the vignette and already retting issues with the first line of code
to get biological process GO terms
TERM2GENE = getTERM2GENE(GSEA_Type = c("GO:BP")
it errors:
! Assigned data
gsub(MDF$gs_subcat, pattern = "CP:", replacement = "", perl = TRUE)must be compatible with existing data.✖ Existing data has 4475391 rows.
✖ Assigned data has 0 rows.
ℹ Only vectors of size 1 are recycled.
Caused by error in
vectbl_recycle_rhs_rows():! Can't recycle input of size 0 to size 4475391.
Warning message:
Unknown or uninitialised column:
gs_subcat.Please advise how to fix this error.
r$> sessionInfo()
R version 4.4.0 (2024-04-24)
Platform: x86_64-apple-darwin20
Running under: macOS Big Sur ... 10.16
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] correlationAnalyzeR_1.0.0