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Refactor test modules and improve CLI error handling #359

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Job	Run time
lint + typecheck + tests (py3.13)	2m 52s
lint + typecheck + tests (py3.12)	2m 41s
pip-audit (dependency CVEs)	37s
pre-commit	1m 34s
brew style (Homebrew formula)	41s
build + twine check	14s
lint + typecheck + tests	2s
	8m 41s