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Fix bump_patch.sh script and update references #338

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Run time

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Job	Run time
pip-audit (dependency CVEs)	47s
pre-commit	1m 23s
lint + typecheck + tests (py3.12)	2m 51s
brew style (Homebrew formula)	46s
build + twine check	16s
lint + typecheck + tests (py3.13)	2m 45s
lint + typecheck + tests	4s
	8m 52s