CrossDome1/NAMESPACE at main · AntunesLab/CrossDome1 · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
# Generated by roxygen2: do not edit by hand

S3method(filter,xrResult)
S3method(mutate,xrResult)
S3method(select,xrResult)
export("%>%")
export(cross_background)
export(cross_browser)
export(cross_compose)
export(cross_expression_matrix)
export(cross_expression_plot)
export(cross_pair_summary)
export(cross_pairwise_plot)
export(cross_peptide_properties)
export(cross_prediction_plot)
export(cross_substitution_matrix)
export(cross_substitution_plot)
export(cross_tissues_plot)
export(cross_write)
exportClasses(xrBackground)
exportClasses(xrResult)
exportMethods(cross_compose)
exportMethods(cross_expression_matrix)
exportMethods(cross_expression_plot)
exportMethods(cross_prediction_plot)
exportMethods(cross_substitution_matrix)
exportMethods(cross_substitution_plot)
exportMethods(show)
import(corrplot)
import(ggplot2)
import(patchwork)
importFrom(Biostrings,AAStringSet)
importFrom(Biostrings,AA_STANDARD)
importFrom(ComplexHeatmap,anno_barplot)
importFrom(ComplexHeatmap,anno_text)
importFrom(ComplexHeatmap,draw)
importFrom(ComplexHeatmap,pheatmap)
importFrom(ComplexHeatmap,rowAnnotation)
importFrom(DT,dataTableOutput)
importFrom(DT,renderDataTable)
importFrom(corrplot,corrplot)
importFrom(dplyr,filter)
importFrom(dplyr,mutate)
importFrom(dplyr,quos)
importFrom(dplyr,select)
importFrom(grid,gpar)
importFrom(grid,unit)
importFrom(magrittr,"%>%")
importFrom(methods,new)
importFrom(methods,slotNames)
importFrom(shiny,runApp)
importFrom(stats,aggregate)
importFrom(stats,cor)
importFrom(stats,cor.test)
importFrom(stats,reorder)
importFrom(stats,setNames)
importFrom(universalmotif,create_motif)
importFrom(universalmotif,view_motifs)
importFrom(utils,View)
importFrom(utils,head)
importFrom(utils,packageDescription)
importFrom(utils,write.table)