diff --git a/src/aind_exaspim_image_compression/utils/img_util.py b/src/aind_exaspim_image_compression/utils/img_util.py index e0daa3e..ce5ec5a 100644 --- a/src/aind_exaspim_image_compression/utils/img_util.py +++ b/src/aind_exaspim_image_compression/utils/img_util.py @@ -122,7 +122,8 @@ def _read_neuroglancer_precompted(img_path): img = img[ts.d[0].transpose[2]] img = img[ts.d[0].transpose[1]] return img[:].read().result() - + + def _read_tiff(img_path, storage_options=None): """ Reads a TIFF file from local disk or GCS. @@ -347,7 +348,9 @@ def compute_cratio(img, codec, patch_shape=(64, 64, 64)): return round(total_uncompressed_size / total_compressed_size, 2) -def compute_cratio_jpegxl(img, codec, patch_shape=(128, 128, 64), max_workers=32): +def compute_cratio_jpegxl( + img, codec, patch_shape=(128, 128, 64), max_workers=32 +): # Helper routine def compress_patch(idx): iterator = zip(idx, patch_shape, img.shape) diff --git a/src/aind_exaspim_image_compression/utils/swc_util.py b/src/aind_exaspim_image_compression/utils/swc_util.py index 1268185..326db48 100644 --- a/src/aind_exaspim_image_compression/utils/swc_util.py +++ b/src/aind_exaspim_image_compression/utils/swc_util.py @@ -121,6 +121,7 @@ def read(self, swc_pointer): # Path to single SWC file if ".swc" in swc_pointer: return self.read_from_path(swc_pointer) + # No swcs found print(f"No swcs found at -{swc_pointer}-") return list()