From f71c92ce99850e8dd9e1b95dc7e2aeb0faddbe31 Mon Sep 17 00:00:00 2001 From: Thanh Lee Date: Sat, 4 Jul 2026 12:40:41 +0000 Subject: [PATCH] docs(agc): note command group ships in v0.18.0 --- docs/guides/agc.md | 3 +++ 1 file changed, 3 insertions(+) diff --git a/docs/guides/agc.md b/docs/guides/agc.md index 59f36cc..3ab7e08 100644 --- a/docs/guides/agc.md +++ b/docs/guides/agc.md @@ -7,6 +7,9 @@ AllTheBacteria assemblies are distributed as **AGC** (Assembled Genome Compresso - **`atb agc index`** — build a searchable index of the OSF-hosted archives (what `--species` searches). - **`atb agc install`** — fetch the upstream `agc` binary the others shell out to. +!!! info "Availability" + The `atb agc` command group is new in **v0.18.0**; it is not in v0.17.x. The 0.18.0 line is currently in beta while the by-species workflow settles, so install it from the [v0.18.0-beta.2 pre-release](https://github.com/AllTheBacteria/atb-cli/releases/tag/v0.18.0-beta.2) (newer betas appear on the [releases page](https://github.com/AllTheBacteria/atb-cli/releases)). The installer's default stays on the latest stable until 0.18.0 is released. + !!! note "Which command do I want?" Reach for **`atb agc download`** to get genomes by sample accession or by species — it handles resolution, download, and extraction. Drop down to **`atb agc ls`/`info`/`get`** only when you already have a local `.agc` file, or to **`atb agc index`** when you want to (re)generate the by-species index. All shell out to the upstream `agc` binary, so install it first.