From 41b9c1ee9b244c51bfe20cf0e48cca7ccccac524 Mon Sep 17 00:00:00 2001 From: ScissorJack-ever <1533201944@qq.com> Date: Tue, 2 Sep 2025 03:03:39 +0000 Subject: [PATCH 1/5] feat: finish cov test --- .coverage | Bin 0 -> 53248 bytes pyproject.toml | 4 +- python/src/alayalite/client.py | 14 +- python/src/alayalite/common.py | 39 +- python/src/alayalite/schema.py | 31 +- python/src/alayalite/utils.py | 27 +- python/tests/test_client.py | 46 ++- python/tests/test_client_with_url.py | 95 +++++ python/tests/test_collection.py | 21 +- python/tests/test_md5.py | 43 ++ python/tests/test_vec_loader.py | 50 +++ uv.lock | 576 +++++++++++++-------------- 12 files changed, 600 insertions(+), 346 deletions(-) create mode 100644 .coverage create mode 100644 python/tests/test_client_with_url.py create mode 100644 python/tests/test_md5.py create mode 100644 python/tests/test_vec_loader.py diff --git a/.coverage b/.coverage new file mode 100644 index 0000000000000000000000000000000000000000..432214249c9378a9b4e9079fd76602c6c3a98abc GIT binary patch literal 53248 zcmeI4-)|h%702)F?CyB|V<)YXZjDQQTeY=KY%f-&LY!8_fFq%%;zy%O6|~Fj?p=H6 z?#yOpHjWjwUPGl+L8x!#1p(?G(1O(0Harx8)Q5@(q(Ids>H|SVrHCI2s-f;V^J9M` zF=CYmLh`-doga7Zx%ZsUJ?GxNJL~!3{YUIT$(rjmtU!KS>=BwK4oNA5$kBU@-bpg( zAf24hUh6sD?Jy@6e(~cm^G9Md`-CumI(Dx)Kl;?zw?El;@+8T_veNtx^?D&u&=WhWwe@ zmbgc6D}m_OZ=jqcA?Mol>DqmRF(I zNS`&7(KY3s8dX$ry((*8_AIBeru;c+bu6s7r00nsvet7O#lV$y+X>Bdd^@mRN2(L5 z(h5}diU!Uxv?LL{UTdhXhuNTqBgwd}9y(p&D@ex0W8oSp=eP;ht{^u}!lBMit5GK8 zkF*+1?i`Yc8V=muBzKby+}PMp-8Wb0%dWkB-I*Zg9*v}0j(x19I-Nf!yOMLE8IC(A z*$DE0Z;oUO2gWr)Ua3y_$LjQXt7NqTH#{#<=a&{~Gy2Of3>k%~Decs;&`}sqscZ*+ z=OEYTG@a~ST!*jk?l&AI{Z7JBRIf|77KRK<%cyh6n|ouXn82_+4m9b;1xeG-)Z18D z(m|H%Zn@vrLXYtk1qh7=NwHeXsc@+HY(vF8t~_g1EyP!&Vd1lOByyd_T(+<>wVUg7 zT%ferIUL@a$Qp&oN$t^G=tgmG#XFTct zIrB!guspe&IdQqtVtg>PWu%S5zJ1zO6cIcw@jKIJ1m|=^;F5{p)2rXKf;D-$?wn1E zPiL})gZp+R~z%ktvZb+P0RKuWN8eJ zW&p_rs}>cu%5EzN{g+Qe_vE>!t8Y|6_dH=wrDnt86yEo_zHigC%F~v=l;q0kHOuEw z$e)&F*R3ndiRK29xW}h9ZC{2uTs|w^(XGSZ;5t^1Plq}slM4^?M=9u%_@aYG!*Z(e ze8tmnR4a}B9Gu)vG>DL(oTi}kDMT-+GpRJb$|F`%|3Z_PaIFoi8ihM|N>7dJYwEJ< zqS@$fD^P*mP?C#;%7l)!Zuzp}DY{5=>Fl)rNp8TsRa)dNuabxOqukb%W)$}C*S1=5 zFh=7{$)`!ZVI^wEr>QWQP zz}L)eK`$f_009sH0T2KI5C8!X009sH0T2Lz>yLo0r8I-r|0(mlFyE#P5(t0*2!H?x zfB*=900@8p2!H?xfWYUHz-UUp*-U=naqAvUpPYz)1902I;;jqc878Yz=9|KN)BNCb zX&{sa0T2KI5C8!X009sH0T2KI5C8!X=nxpyZ`P8p0aC;IWG?;|fbahgN&ZP{l`VYt3?t%XMqR z;>X7on;XHJ>lA&jQnWaepK(&Gs+!fR(_=xJ8@Cy{XbmFU3hX)y-k#OP`XGYQ|GjgQ znE{&&AIHK?rUz`2A8Oz_B>7!k7n_49TXE}k6+VW9+f5DHZrxT+K$1(^fIU+x*^V8Q zN+iqo|A+GXh54fSxcLKfJikBxdj8q`>J94TFdGCw00ck)1V8`;KmY_l00cllh=ck` zZIIP%&-#DpcD*%_Y_k404(RIx33k^1*+H93*8iD7o9wLr)8ErK2U50g{jU$)ZnFMQ zE$Jt7gY-<#`XA5#Lui8l2!H?xfB*=900@8p2!H?xfWUQ4K&PJ#jPd<{&HPBv3kd{3 z00ck)1V8`;KmY_l00ck)1VG?AB%teKIlljInBNfQd*;jL(`MUz$XudRBoF`r5C8!X z009sH0T2KI5C8!XxZw!wHPTw{7DKe}%e`=JynW^`Q{uySM`V_A@63w!J2#1!H~;p* z|1Ms)@6=2zdk@cc7RwqMX@bh`S0F51n5htEImzIW*3 z^6b0YAFsUqr$7Aaqu>5BbEy2gz1zntzd57Lrl{o66qS7PYv(WQ4DFq1r_QF@KM~Ir z+WfbZIluY5_(!q5Zj5N@T<#{(KJ?coM4Ipa8|Ev*+&14g|82fuo-@zVDG~^P00@8p z2!H?xfB*=900@8p2!Oz~On|?Y&d}bhy*?aF1%-S{=e9BEgJ;g zKmY_l00ck)1V8`;KmY_l00ck)1g@3<-~Y$@|7s~h9t1!D1V8`;KmY_l00ck)1V8`; ou5AMR|NmJ3U)y~I?LYtoKmY_l00ck)1V8`;KmY_l;A#o{ALh*A*Z=?k literal 0 HcmV?d00001 diff --git a/pyproject.toml b/pyproject.toml index 891f8c37..a0f8121d 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -57,8 +57,8 @@ dev-dependencies = ["pytest", "ruff"] [[tool.uv.index]] # url = "https://mirrors.sustech.edu.cn/pypi/web/simple" # SUSTech mirror -# url = "https://mirrors.tuna.tsinghua.edu.cn/pypi/web/simple" # Tsinghua mirror -url = "https://pypi.org/simple" +url = "https://mirrors.tuna.tsinghua.edu.cn/pypi/web/simple" # Tsinghua mirror +# url = "https://pypi.org/simple" default = true # https://beta.ruff.rs/docs/settings/ diff --git a/python/src/alayalite/client.py b/python/src/alayalite/client.py index 80def8bc..6cec1df3 100644 --- a/python/src/alayalite/client.py +++ b/python/src/alayalite/client.py @@ -45,7 +45,6 @@ def __init__(self, url=None): self.__collection_map = {} self.__index_map = {} self.__url = None - if url is not None: self.__url = os.path.abspath(url) if not os.path.exists(self.__url): @@ -103,9 +102,13 @@ def get_index(self, name: str = "default") -> Index: name (str, optional): The name of the index to retrieve. Defaults to "default". Returns: - Index or None: The index if found, else None. + _PyIndexInterface (cpp class): The index if found, else None """ - return self.__index_map.get(name) + if name in self.__index_map: + return self.__index_map[name] + else: + print(f"Index {name} does not exist") + return None def create_collection(self, name: str = "default", **_kwargs) -> Collection: """ @@ -249,8 +252,6 @@ def save_index(self, index_name: str): raise RuntimeError(f"Index '{index_name}' does not exist") index_url = os.path.join(self.__url, index_name) - if not os.path.exists(index_url): - os.makedirs(index_url) schema_map = self.__index_map[index_name].save(index_url) index_schema_url = os.path.join(index_url, "schema.json") with open(index_schema_url, "w", encoding="utf-8") as f: @@ -273,9 +274,6 @@ def save_collection(self, collection_name: str): raise RuntimeError(f"Collection '{collection_name}' does not exist") collection_url = os.path.join(self.__url, collection_name) - if not os.path.exists(collection_url): - os.makedirs(collection_url) - schema_map = self.__collection_map[collection_name].save(collection_url) collection_schema_url = os.path.join(collection_url, "schema.json") diff --git a/python/src/alayalite/common.py b/python/src/alayalite/common.py index 27fd116c..b4034140 100644 --- a/python/src/alayalite/common.py +++ b/python/src/alayalite/common.py @@ -38,12 +38,12 @@ Type[np.uint32], ] """ Type alias for one of {`numpy.float32`, `numpy.int8`, `numpy.uint8`} """ -DistanceMetric: TypeAlias = Literal["euclidean", "l2", "ip", "cosine"] -""" Type alias for one of {"euclidean", "l2", "ip", "cosine"} """ +DistanceMetric: TypeAlias = Literal["euclidean", "l2", "ip", "cosine", "cos"] +""" Type alias for one of {"euclidean", "l2", "ip", "cosine", "cos"} """ QuantizationType: TypeAlias = Literal[None, "none", "sq8", "sq4"] """ Type alias for one of {None, "none", "sq8", "sq4"} """ -IndexType: TypeAlias = Literal["hnsw", "flat"] -""" Type alias for one of {"hnsw", "flat"} """ +IndexType: TypeAlias = Literal["hnsw", "nsg", "fusion"] +""" Type alias for one of {"hnsw", "nsg" ,"fusion"} """ VectorLike: TypeAlias = npt.NDArray[VectorDType] # type: ignore """ Type alias for something that can be treated as a vector """ VectorLikeBatch: TypeAlias = npt.NDArray[VectorDType] # type: ignore @@ -51,8 +51,8 @@ _VALID_IDTYPES = [np.uint64, np.uint32] _VALID_DTYPES = [np.float32, np.int8, np.uint8, np.float64, np.int32, np.uint32] -_VALID_METRIC_TYPES = ["euclidean", "l2", "ip", "cosine"] -_VALID_INDEX_TYPES = ["hnsw", "flat", "nsg", "fusion"] +_VALID_METRIC_TYPES = ["euclidean", "l2", "ip", "cosine", "cos"] +_VALID_INDEX_TYPES = ["hnsw", "nsg", "fusion"] _VALID_SQ_TYPES = [None, "none", "sq8", "sq4"] __all__ = [ @@ -93,25 +93,33 @@ def valid_capacity_type(capacity: np.dtype) -> np.uint32: return capacity -def valid_metric_type(metric: str) -> _MetricType: +def assert_valid_metric_type(metric: str) -> None: _assert( metric.lower() in _VALID_METRIC_TYPES, f"Distance metric must be one of {_VALID_METRIC_TYPES}", ) + + +def valid_metric_type(metric: str) -> _MetricType: + assert_valid_metric_type(metric) if metric.lower() == "ip": return _MetricType.IP elif metric.lower() == "l2" or metric.lower() == "euclidean": return _MetricType.L2 - elif metric.lower() == "cosine": - return _MetricType.COSINE + elif metric.lower() == "cosine" or metric.lower() == "cos": + return _MetricType.COS -def valid_quantization_type(quantization_type: str) -> _QuantizationType: +def assert_valid_quantization_type(quantization_type: str) -> None: _assert( - quantization_type.lower() in _VALID_SQ_TYPES, + quantization_type is None or quantization_type.lower() in _VALID_SQ_TYPES, f"Quantization type must be one of {_VALID_SQ_TYPES}", ) + +def valid_quantization_type(quantization_type: str) -> _QuantizationType: + assert_valid_quantization_type(quantization_type) + if quantization_type is None: return _QuantizationType.NONE elif quantization_type.lower() == "none": @@ -122,15 +130,18 @@ def valid_quantization_type(quantization_type: str) -> _QuantizationType: return _QuantizationType.SQ4 -def valid_index_type(index: str) -> _IndexType: +def assert_valid_index_type(index: str) -> None: _assert( index.lower() in _VALID_INDEX_TYPES, f"Index type must be one of {_VALID_INDEX_TYPES}", ) + + +def valid_index_type(index: str) -> _IndexType: + assert_valid_index_type(index) + if index.lower() == "hnsw": return _IndexType.HNSW - elif index.lower() == "flat": - return _IndexType.FLAT elif index.lower() == "nsg": return _IndexType.NSG elif index.lower() == "fusion": diff --git a/python/src/alayalite/schema.py b/python/src/alayalite/schema.py index 3b83853c..8a7c89b0 100644 --- a/python/src/alayalite/schema.py +++ b/python/src/alayalite/schema.py @@ -28,6 +28,9 @@ from .common import ( IDType, VectorDType, + assert_valid_index_type, + assert_valid_metric_type, + assert_valid_quantization_type, valid_capacity_type, valid_dtype, valid_id_type, @@ -42,15 +45,13 @@ @dataclass class IndexParams: - """Parameters for defining a vector index.""" - - index_type: str = "hnsw" - data_type: VectorDType = np.float32 - id_type: IDType = np.uint32 - quantization_type: str = "none" - metric: str = "l2" - capacity: np.uint32 = 100000 - max_nbrs: int = 32 + index_type: str = None + data_type: VectorDType = None + id_type: IDType = None + quantization_type: str = None + metric: str = None + capacity: np.uint32 = None + max_nbrs: int = None def index_path(self, folder_uri): return os.path.join(folder_uri, f"{self.index_type}_{self.metric}_{self.max_nbrs}.index") @@ -132,15 +133,21 @@ def from_kwargs(cls, **kwargs) -> "IndexParams": max_nbrs = None if kwargs.get("index_type") is not None: - index_type = valid_index_type(kwargs.get("index_type")) + ind_type = kwargs.get("index_type") + assert_valid_index_type(ind_type) + index_type = ind_type if kwargs.get("data_type") is not None: data_type = valid_dtype(kwargs.get("data_type")) if kwargs.get("id_type") is not None: id_type = valid_id_type(kwargs.get("id_type")) if kwargs.get("quantization_type") is not None: - quantization_type = valid_quantization_type(kwargs.get("quantization_type")) + qt = kwargs.get("quantization_type") + assert_valid_quantization_type(qt) + quantization_type = qt if kwargs.get("metric") is not None: - metric = valid_metric_type(kwargs.get("metric")) + mt = kwargs.get("metric") + assert_valid_metric_type(mt) + metric = mt if kwargs.get("capacity") is not None: capacity = valid_capacity_type(kwargs.get("capacity")) if kwargs.get("max_nbrs") is not None: diff --git a/python/src/alayalite/utils.py b/python/src/alayalite/utils.py index 3250ea37..e463bca5 100644 --- a/python/src/alayalite/utils.py +++ b/python/src/alayalite/utils.py @@ -21,7 +21,7 @@ import numpy as np -__all__ = ["load_fvecs", "load_ivecs", "calc_recall", "calc_gt"] +__all__ = ["load_fvecs", "load_ivecs", "calc_recall", "calc_gt", "md5"] def load_fvecs(file_path): @@ -77,14 +77,23 @@ def load_ivecs(file_path): def calc_recall(result, gt_data): cnt = 0 - for i in range(result.shape[0]): - for j in range(result.shape[1]): - for k in range(result.shape[1]): - if result[i][j] == gt_data[i][k]: - cnt += 1 - break - - return 1.0 * cnt / (len(result) * result.shape[1]) + row = result.shape[0] + col = result.shape[1] + for i in range(row): + cnt += len(set(result[i]) & set(gt_data[i])) + return 1.0 * cnt / (row * col) + + +# def calc_recall(result, gt_data): +# cnt = 0 +# for i in range(result.shape[0]): +# for j in range(result.shape[1]): +# for k in range(result.shape[1]): +# if result[i][j] == gt_data[i][k]: +# cnt += 1 +# break + +# return 1.0 * cnt / (len(result) * result.shape[1]) def calc_gt(data, query, topk): diff --git a/python/tests/test_client.py b/python/tests/test_client.py index 8dbeacd2..9068756b 100644 --- a/python/tests/test_client.py +++ b/python/tests/test_client.py @@ -31,6 +31,8 @@ def test_create_collection(self): collection = self.client.create_collection("test_collection") self.assertIsInstance(collection, Collection) self.assertIn("test_collection", self.client.list_collections()) + with self.assertRaises(RuntimeError): + self.client.save_collection("test_collection") def test_create_duplicate_collection(self): self.client.create_collection("test_collection") @@ -43,17 +45,19 @@ def test_get_collection(self): self.assertIsInstance(collection, Collection) def test_create_index(self): - index = self.client.create_index("test_index", index_type="flat") + index = self.client.create_index("test_index", metric="ip") self.assertIsInstance(index, Index) self.assertIn("test_index", self.client.list_indices()) + with self.assertRaises(RuntimeError): + self.client.save_index("test_index") def test_create_duplicate_index(self): - self.client.create_index("test_index", index_type="flat") + self.client.create_index("test_index") with self.assertRaises(RuntimeError): - self.client.create_index("test_index", index_type="flat") + self.client.create_index("test_index") def test_get_index(self): - self.client.create_index("test_index", index_type="flat") + self.client.create_index("test_index") index = self.client.get_index("test_index") self.assertIsInstance(index, Index) @@ -63,27 +67,49 @@ def test_get_or_create_collection(self): self.assertIs(collection1, collection2) def test_get_or_create_index(self): - index1 = self.client.get_or_create_index("test_index", index_type="flat") - index2 = self.client.get_or_create_index("test_index", index_type="flat") + index1 = self.client.get_or_create_index("test_index") + index2 = self.client.get_or_create_index("test_index") self.assertIs(index1, index2) def test_delete_collection(self): self.client.create_collection("test_collection") - self.client.delete_collection("test_collection") + with self.assertRaises(RuntimeError): # Without url + self.client.delete_collection("test_collection", True) self.assertNotIn("test_collection", self.client.list_collections()) + with self.assertRaises(RuntimeError): + self.client.delete_collection("non_exist") def test_delete_index(self): - self.client.create_index("test_index", index_type="flat") - self.client.delete_index("test_index") + self.client.create_index("test_index") + with self.assertRaises(RuntimeError): # Without url + self.client.delete_index("test_index", True) self.assertNotIn("test_index", self.client.list_indices()) + with self.assertRaises(RuntimeError): + self.client.delete_index("non_exist") def test_reset(self): self.client.create_collection("test_collection") - self.client.create_index("test_index", index_type="flat") + self.client.create_index("test_index") self.client.reset() self.assertEqual(len(self.client.list_collections()), 0) self.assertEqual(len(self.client.list_indices()), 0) + def test_get_non_exist(self): + index = self.client.get_index("non_exist") + self.assertIsNone(index) + coll = self.client.get_collection("non_exist") + self.assertIsNone(coll) + + def test_dup_ind_coll(self): + _ = self.client.create_index("dup", metric="cosine", quantization_type=None) + with self.assertRaises(RuntimeError): + _ = self.client.create_collection("dup") + + def test_dup_coll_ind(self): + _ = self.client.create_collection("dup") + with self.assertRaises(RuntimeError): + _ = self.client.create_index("dup") + if __name__ == "__main__": unittest.main() diff --git a/python/tests/test_client_with_url.py b/python/tests/test_client_with_url.py new file mode 100644 index 00000000..f191ff71 --- /dev/null +++ b/python/tests/test_client_with_url.py @@ -0,0 +1,95 @@ +import os +import tempfile +import unittest + +import numpy as np +from alayalite import Client + + +class TestClientWithURL(unittest.TestCase): + def setUp(self): + self.tempDire = tempfile.TemporaryDirectory() + self.url = self.tempDire.name + self.client = Client(self.url) + self.ind_vectors = np.random.rand(1000, 128).astype(np.float32) + self.coll_items = [ + (1, "Document 1", np.array([0.1, 0.2, 0.3]), {"category": "A"}), + (2, "Document 2", np.array([0.4, 0.5, 0.6]), {"category": "B"}), + ] + + def tearDown(self): + self.tempDire.cleanup() + + def test_save_and_delete_ind(self): + with self.assertRaises(RuntimeError): + self.client.save_index("non-exist") + index_name = "ind" + index = self.client.create_index(index_name) + index.fit(self.ind_vectors) + self.assertIn(index_name, self.client.list_indices()) + + self.client.save_index(index_name) + index_path = os.path.join(self.url, index_name) + self.assertTrue(os.path.isdir(index_path)) + schema_path = os.path.join(index_path, "schema.json") + self.assertTrue(os.path.isfile(schema_path)) + + self.client.delete_index(index_name, True) + self.assertNotIn(index_name, self.client.list_indices()) + self.assertFalse(os.path.isdir(index_path)) + self.assertFalse(os.path.isfile(schema_path)) + + def test_save_and_delete_coll(self): + with self.assertRaises(RuntimeError): + self.client.save_collection("non-exist") + coll_name = "coll" + coll = self.client.create_collection(coll_name) + coll.insert(self.coll_items) + self.assertIn(coll_name, self.client.list_collections()) + + self.client.save_collection(coll_name) + coll_path = os.path.join(self.url, coll_name) + self.assertTrue(os.path.isdir(coll_path)) + schema_path = os.path.join(coll_path, "schema.json") + self.assertTrue(os.path.isfile(schema_path)) + + self.client.delete_collection(coll_name, True) + self.assertNotIn(coll_name, self.client.list_collections()) + self.assertFalse(os.path.isdir(coll_path)) + self.assertFalse(os.path.isfile(schema_path)) + + def test_init_load(self): + index_name = "ind" + index = self.client.create_index( + index_name, metric="ip", quantization_type="sq8", index_type="nsg", max_nbrs=100 + ) + index.fit(self.ind_vectors) + self.client.save_index(index_name) + coll_name = "coll" + coll = self.client.create_collection(coll_name) + coll.insert(self.coll_items) + self.client.save_collection(coll_name) + _ = Client(self.url) # load + + def test_load_different(self): + index_name = "ind1" + index1 = self.client.create_index( + index_name, metric="cos", quantization_type="sq4", index_type="fusion", id_type=np.uint32 + ) + index1.fit(self.ind_vectors) + with self.assertRaises(RuntimeError): # double fit + index1.fit(self.ind_vectors) + self.client.save_index(index_name) + with self.assertRaises(ValueError): + _ = self.client.create_index("illegal_nbr_ind", max_nbrs=1000) + _ = Client(self.url) # load + + def test_data_type_mismatch(self): + index_name = "ind" + index = self.client.create_index(index_name, data_type=np.int8) + with self.assertRaises(ValueError): + index.fit(self.ind_vectors) + + +if __name__ == "__main__": + unittest.main() diff --git a/python/tests/test_collection.py b/python/tests/test_collection.py index 7d6612da..f62c54a3 100644 --- a/python/tests/test_collection.py +++ b/python/tests/test_collection.py @@ -41,9 +41,24 @@ def test_insert(self): result = self.collection.filter_query({}) self.assertEqual(len(result["id"]), 2) - def test_batch_query_single_result(self): - """Test a batch query that returns a single nearest neighbor.""" - items = [(1, "Doc 1", np.array([0.1, 0.2, 0.3]), {}), (2, "Doc 2", np.array([0.4, 0.5, 0.6]), {})] + def test_upsert_fit_and_concat(self): + items = [ + (1, "Document 1", np.array([0.1, 0.2, 0.3]), {"category": "A"}), + (2, "Document 2", np.array([0.4, 0.5, 0.6]), {"category": "B"}), + ] + self.collection.upsert(items) + result = self.collection.filter_query({}) + self.assertEqual(len(result["id"]), 2) + new_items = [ + (3, "Document 3", np.array([0.1, 0.2, 0.3]), {"category": "A"}), + (4, "Document 4", np.array([0.4, 0.5, 0.6]), {"category": "B"}), + ] + self.collection.upsert(new_items) + result = self.collection.filter_query({}) + self.assertEqual(len(result["id"]), 4) + + def test_batch_query(self): + items = [(1, "Document 1", np.array([0.1, 0.2, 0.3]), {}), (2, "Document 2", np.array([0.4, 0.5, 0.6]), {})] self.collection.insert(items) result = self.collection.batch_query([[0.1, 0.2, 0.3]], limit=1, ef_search=10) self.assertEqual(len(result["id"]), 1) diff --git a/python/tests/test_md5.py b/python/tests/test_md5.py new file mode 100644 index 00000000..cbf25156 --- /dev/null +++ b/python/tests/test_md5.py @@ -0,0 +1,43 @@ +import hashlib +import unittest + +import numpy as np +from alayalite.utils import md5 + + +class TestMD5Function(unittest.TestCase): + def test_same_array_same_hash(self): + arr = np.array([1, 2, 3], dtype=np.int32) + hash1 = md5(arr) + hash2 = md5(arr) + self.assertEqual(hash1, hash2) + + def test_different_array_different_hash(self): + arr1 = np.array([1, 2, 3], dtype=np.int32) + arr2 = np.array([4, 5, 6], dtype=np.int32) + hash1 = md5(arr1) + hash2 = md5(arr2) + self.assertNotEqual(hash1, hash2) + + def test_large_array(self): + arr = np.random.rand(10_000_000).astype(np.float32) # 10 million float32 + expected_hash = hashlib.md5(arr.tobytes()).hexdigest() + computed_hash = md5(arr) + self.assertEqual(computed_hash, expected_hash) + + def test_dtype_independence(self): + arr1 = np.array([1, 2, 3], dtype=np.int32) + arr2 = np.array([1, 2, 3], dtype=np.float32) + hash1 = md5(arr1) + hash2 = md5(arr2) + self.assertNotEqual(hash1, hash2) + + def test_chunk_size_effect(self): + arr = np.random.rand(10000).astype(np.float32) + hash1 = md5(arr, chunk_size=1024) + hash2 = md5(arr, chunk_size=1024 * 1024) + self.assertEqual(hash1, hash2) + + +if __name__ == "__main__": + unittest.main() diff --git a/python/tests/test_vec_loader.py b/python/tests/test_vec_loader.py new file mode 100644 index 00000000..dca24030 --- /dev/null +++ b/python/tests/test_vec_loader.py @@ -0,0 +1,50 @@ +import os +import tempfile +import unittest + +import numpy as np +from alayalite.utils import load_fvecs, load_ivecs + + +class TestVectorLoaders(unittest.TestCase): + def test_load_fvecs(self): + expected = np.array([[1.0, 2.0], [3.0, 4.0]], dtype=np.float32) + + with tempfile.NamedTemporaryFile(delete=False) as tmpfile: + for vec in expected: + dim = len(vec) + tmpfile.write(dim.to_bytes(4, byteorder="little")) + tmpfile.write(vec.tobytes()) + + result = load_fvecs(tmpfile.name) + np.testing.assert_array_equal(result, expected) + os.unlink(tmpfile.name) + + def test_load_ivecs(self): + expected = np.array([[1, 2], [3, 4]], dtype=np.int32) + + with tempfile.NamedTemporaryFile(delete=False) as tmpfile: + for vec in expected: + dim = len(vec) + tmpfile.write(dim.to_bytes(4, byteorder="little")) + tmpfile.write(vec.tobytes()) + + result = load_ivecs(tmpfile.name) + np.testing.assert_array_equal(result, expected) + os.unlink(tmpfile.name) + + def test_empty_file(self): + with tempfile.NamedTemporaryFile(delete=False) as tmpfile: + pass + + result_f = load_fvecs(tmpfile.name) + self.assertEqual(result_f.shape, 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b/.github/workflows/code-cover.yaml @@ -0,0 +1,28 @@ +--- +name: Run coverage testing and upload coverage + +on : [push, pull_request] + +jobs: + test: + name: Run tests and collect coverage + runs-on: ubuntu-latest + steps: + - name: Checkout + uses: actions/checkout@v4 + with: + fetch-depth: 2 + + - name: Set up Python + uses: actions/setup-python@v4 + + - name: Install dependencies + run: pip install pytest pytest-cov + + - name: Run tests + run: uv run pytest --cov --cov-branch --cov-report=xml + + - name: Upload results to Codecov + uses: codecov/codecov-action@v5 + with: + token: ${{ secrets.CODECOV_TOKEN }} diff --git a/.gitignore b/.gitignore index 4bf1d668..9d420726 100644 --- a/.gitignore +++ b/.gitignore @@ -35,3 +35,7 @@ venv*/** # data data/* + +# codecov +.coverage +coverage.xml diff --git a/pyproject.toml b/pyproject.toml index a0f8121d..0bb82f50 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -22,8 +22,8 @@ dependencies = ["pandas>=1.3.3"] [project.urls] "Homepage" = "https://github.com/AlayaDB-AI/AlayaLite" -[project.optional-dependencies] -dev = ["pytest", "ruff"] +[tool.uv] +dev-dependencies = ["pytest", "pytest-cov", "ruff"] # ----------------- build whl begin ------------------ [tool.scikit-build] @@ -52,13 +52,10 @@ archs = ["x86_64"] before-build = "yum -y install perl-IPC-Cmd perl-Digest-SHA" # ----------------- build whl end ------------------ -[tool.uv] -dev-dependencies = ["pytest", "ruff"] - [[tool.uv.index]] # url = "https://mirrors.sustech.edu.cn/pypi/web/simple" # SUSTech mirror -url = "https://mirrors.tuna.tsinghua.edu.cn/pypi/web/simple" # Tsinghua mirror -# url = "https://pypi.org/simple" +# url = "https://mirrors.tuna.tsinghua.edu.cn/pypi/web/simple" # Tsinghua mirror +url = "https://pypi.org/simple" default = true # https://beta.ruff.rs/docs/settings/ diff --git a/uv.lock b/uv.lock index 18119350..0fc463da 100644 --- a/uv.lock +++ b/uv.lock @@ -1,5 +1,5 @@ version = 1 -revision = 2 +revision = 1 requires-python = ">=3.8" 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Wed, 3 Sep 2025 05:33:19 +0000 Subject: [PATCH 3/5] ci: fix license head and pylint --- .github/workflows/code-cover.yaml | 11 +- python/src/alayalite/schema.py | 2 + python/tests/test_client_with_url.py | 152 +++++++++++++++------------ python/tests/test_md5.py | 18 ++++ python/tests/test_vec_loader.py | 18 ++++ 5 files changed, 132 insertions(+), 69 deletions(-) diff --git a/.github/workflows/code-cover.yaml b/.github/workflows/code-cover.yaml index f7ec56b7..a26aa19f 100644 --- a/.github/workflows/code-cover.yaml +++ b/.github/workflows/code-cover.yaml @@ -1,20 +1,23 @@ --- -name: Run coverage testing and upload coverage +name: Codecov on : [push, pull_request] jobs: test: - name: Run tests and collect coverage + name: codecov runs-on: ubuntu-latest steps: - name: Checkout uses: actions/checkout@v4 with: fetch-depth: 2 + + - name: Restore Caches + uses: ./.github/actions/cache-restore - - name: Set up Python - uses: actions/setup-python@v4 + - name: Install uv + uses: astral-sh/setup-uv@v5 - name: Install dependencies run: pip install pytest pytest-cov diff --git a/python/src/alayalite/schema.py b/python/src/alayalite/schema.py index 8a7c89b0..84373345 100644 --- a/python/src/alayalite/schema.py +++ b/python/src/alayalite/schema.py @@ -45,6 +45,8 @@ @dataclass class IndexParams: + """Parameters for configuring vector index creation and management.""" + index_type: str = None data_type: VectorDType = None id_type: IDType = None diff --git a/python/tests/test_client_with_url.py b/python/tests/test_client_with_url.py index f191ff71..193a1d61 100644 --- a/python/tests/test_client_with_url.py +++ b/python/tests/test_client_with_url.py @@ -1,3 +1,19 @@ +# Copyright 2025 AlayaDB.AI +# +# Licensed under the Apache License, Version 2.0 (the "License"); +# you may not use this file except in compliance with the License. +# You may obtain a copy of the License at +# +# http://www.apache.org/licenses/LICENSE-2.0 +# +# Unless required by applicable law or agreed to in writing, software +# distributed under the License is distributed on an "AS IS" BASIS, +# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +# See the License for the specific language governing permissions and +# limitations under the License. + +"""Tests for Client class functionality with URL-based operations.""" + import os import tempfile import unittest @@ -7,88 +23,94 @@ class TestClientWithURL(unittest.TestCase): + """Test cases for Client class operations with URL-based storage.""" + def setUp(self): - self.tempDire = tempfile.TemporaryDirectory() - self.url = self.tempDire.name - self.client = Client(self.url) self.ind_vectors = np.random.rand(1000, 128).astype(np.float32) self.coll_items = [ (1, "Document 1", np.array([0.1, 0.2, 0.3]), {"category": "A"}), (2, "Document 2", np.array([0.4, 0.5, 0.6]), {"category": "B"}), ] - def tearDown(self): - self.tempDire.cleanup() - def test_save_and_delete_ind(self): - with self.assertRaises(RuntimeError): - self.client.save_index("non-exist") - index_name = "ind" - index = self.client.create_index(index_name) - index.fit(self.ind_vectors) - self.assertIn(index_name, self.client.list_indices()) - - self.client.save_index(index_name) - index_path = os.path.join(self.url, index_name) - self.assertTrue(os.path.isdir(index_path)) - schema_path = os.path.join(index_path, "schema.json") - self.assertTrue(os.path.isfile(schema_path)) - - self.client.delete_index(index_name, True) - self.assertNotIn(index_name, self.client.list_indices()) - self.assertFalse(os.path.isdir(index_path)) - self.assertFalse(os.path.isfile(schema_path)) + with tempfile.TemporaryDirectory() as temp_dir: + client = Client(temp_dir) + with self.assertRaises(RuntimeError): + client.save_index("non-exist") + index_name = "ind" + index = client.create_index(index_name) + index.fit(self.ind_vectors) + self.assertIn(index_name, client.list_indices()) + + client.save_index(index_name) + index_path = os.path.join(temp_dir, index_name) + self.assertTrue(os.path.isdir(index_path)) + schema_path = os.path.join(index_path, "schema.json") + self.assertTrue(os.path.isfile(schema_path)) + + client.delete_index(index_name, True) + self.assertNotIn(index_name, client.list_indices()) + self.assertFalse(os.path.isdir(index_path)) + self.assertFalse(os.path.isfile(schema_path)) def test_save_and_delete_coll(self): - with self.assertRaises(RuntimeError): - self.client.save_collection("non-exist") - coll_name = "coll" - coll = self.client.create_collection(coll_name) - coll.insert(self.coll_items) - self.assertIn(coll_name, self.client.list_collections()) - - self.client.save_collection(coll_name) - coll_path = os.path.join(self.url, coll_name) - self.assertTrue(os.path.isdir(coll_path)) - schema_path = os.path.join(coll_path, "schema.json") - self.assertTrue(os.path.isfile(schema_path)) - - self.client.delete_collection(coll_name, True) - self.assertNotIn(coll_name, self.client.list_collections()) - self.assertFalse(os.path.isdir(coll_path)) - self.assertFalse(os.path.isfile(schema_path)) + with tempfile.TemporaryDirectory() as temp_dir: + client = Client(temp_dir) + with self.assertRaises(RuntimeError): + client.save_collection("non-exist") + coll_name = "coll" + coll = client.create_collection(coll_name) + coll.insert(self.coll_items) + self.assertIn(coll_name, client.list_collections()) + + client.save_collection(coll_name) + coll_path = os.path.join(temp_dir, coll_name) + self.assertTrue(os.path.isdir(coll_path)) + schema_path = os.path.join(coll_path, "schema.json") + self.assertTrue(os.path.isfile(schema_path)) + + client.delete_collection(coll_name, True) + self.assertNotIn(coll_name, client.list_collections()) + self.assertFalse(os.path.isdir(coll_path)) + self.assertFalse(os.path.isfile(schema_path)) def test_init_load(self): - index_name = "ind" - index = self.client.create_index( - index_name, metric="ip", quantization_type="sq8", index_type="nsg", max_nbrs=100 - ) - index.fit(self.ind_vectors) - self.client.save_index(index_name) - coll_name = "coll" - coll = self.client.create_collection(coll_name) - coll.insert(self.coll_items) - self.client.save_collection(coll_name) - _ = Client(self.url) # load + with tempfile.TemporaryDirectory() as temp_dir: + client = Client(temp_dir) + index_name = "ind" + index = client.create_index( + index_name, metric="ip", quantization_type="sq8", index_type="nsg", max_nbrs=100 + ) + index.fit(self.ind_vectors) + client.save_index(index_name) + coll_name = "coll" + coll = client.create_collection(coll_name) + coll.insert(self.coll_items) + client.save_collection(coll_name) + _ = Client(temp_dir) # load def test_load_different(self): - index_name = "ind1" - index1 = self.client.create_index( - index_name, metric="cos", quantization_type="sq4", index_type="fusion", id_type=np.uint32 - ) - index1.fit(self.ind_vectors) - with self.assertRaises(RuntimeError): # double fit + with tempfile.TemporaryDirectory() as temp_dir: + client = Client(temp_dir) + index_name = "ind1" + index1 = client.create_index( + index_name, metric="cos", quantization_type="sq4", index_type="fusion", id_type=np.uint32 + ) index1.fit(self.ind_vectors) - self.client.save_index(index_name) - with self.assertRaises(ValueError): - _ = self.client.create_index("illegal_nbr_ind", max_nbrs=1000) - _ = Client(self.url) # load + with self.assertRaises(RuntimeError): # double fit + index1.fit(self.ind_vectors) + client.save_index(index_name) + with self.assertRaises(ValueError): + _ = client.create_index("illegal_nbr_ind", max_nbrs=1000) + _ = Client(temp_dir) # load def test_data_type_mismatch(self): - index_name = "ind" - index = self.client.create_index(index_name, data_type=np.int8) - with self.assertRaises(ValueError): - index.fit(self.ind_vectors) + with tempfile.TemporaryDirectory() as temp_dir: + client = Client(temp_dir) + index_name = "ind" + index = client.create_index(index_name, data_type=np.int8) + with self.assertRaises(ValueError): + index.fit(self.ind_vectors) if __name__ == "__main__": diff --git a/python/tests/test_md5.py b/python/tests/test_md5.py index cbf25156..fe978e4c 100644 --- a/python/tests/test_md5.py +++ b/python/tests/test_md5.py @@ -1,3 +1,19 @@ +# Copyright 2025 AlayaDB.AI +# +# Licensed under the Apache License, Version 2.0 (the "License"); +# you may not use this file except in compliance with the License. +# You may obtain a copy of the License at +# +# http://www.apache.org/licenses/LICENSE-2.0 +# +# Unless required by applicable law or agreed to in writing, software +# distributed under the License is distributed on an "AS IS" BASIS, +# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +# See the License for the specific language governing permissions and +# limitations under the License. + +"""Tests for MD5 hash functionality.""" + import hashlib import unittest @@ -6,6 +22,8 @@ class TestMD5Function(unittest.TestCase): + """Test cases for MD5 hash function implementation.""" + def test_same_array_same_hash(self): arr = np.array([1, 2, 3], dtype=np.int32) hash1 = md5(arr) diff --git a/python/tests/test_vec_loader.py b/python/tests/test_vec_loader.py index dca24030..1a556acc 100644 --- a/python/tests/test_vec_loader.py +++ b/python/tests/test_vec_loader.py @@ -1,3 +1,19 @@ +# Copyright 2025 AlayaDB.AI +# +# Licensed under the Apache License, Version 2.0 (the "License"); +# you may not use this file except in compliance with the License. +# You may obtain a copy of the License at +# +# http://www.apache.org/licenses/LICENSE-2.0 +# +# Unless required by applicable law or agreed to in writing, software +# distributed under the License is distributed on an "AS IS" BASIS, +# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +# See the License for the specific language governing permissions and +# limitations under the License. + +"""Tests for vector loader utilities.""" + import os import tempfile import unittest @@ -7,6 +23,8 @@ class TestVectorLoaders(unittest.TestCase): + """Test cases for fvecs and ivecs loader functions.""" + def test_load_fvecs(self): expected = np.array([[1.0, 2.0], [3.0, 4.0]], dtype=np.float32) From d847c385cfef48038da8603d51ac4501c1acee53 Mon Sep 17 00:00:00 2001 From: huangliang Date: Wed, 3 Sep 2025 05:40:17 +0000 Subject: [PATCH 4/5] ci: fix pre-commit ci bug --- .github/workflows/code-cover.yaml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/code-cover.yaml b/.github/workflows/code-cover.yaml index a26aa19f..6517c257 100644 --- a/.github/workflows/code-cover.yaml +++ b/.github/workflows/code-cover.yaml @@ -12,7 +12,7 @@ jobs: uses: actions/checkout@v4 with: fetch-depth: 2 - + - name: Restore Caches uses: ./.github/actions/cache-restore From 5a58a2329eb16fa05e5267083e99101ae57ad8f0 Mon Sep 17 00:00:00 2001 From: huangliang Date: Wed, 3 Sep 2025 05:43:12 +0000 Subject: [PATCH 5/5] ci: change code-cover to code-checker.yaml --- .github/workflows/code-checker.yaml | 25 +++++++++++++++++++++++ .github/workflows/code-cover.yaml | 31 ----------------------------- 2 files changed, 25 insertions(+), 31 deletions(-) delete mode 100644 .github/workflows/code-cover.yaml diff --git a/.github/workflows/code-checker.yaml b/.github/workflows/code-checker.yaml index 938af919..e2cece44 100644 --- a/.github/workflows/code-checker.yaml +++ b/.github/workflows/code-checker.yaml @@ -88,6 +88,31 @@ jobs : - name: Run Python unit tests run: uv run pytest + codecov: + runs-on: ubuntu-latest + steps: + - name: Checkout + uses: actions/checkout@v4 + with: + fetch-depth: 2 + + - name: Restore Caches + uses: ./.github/actions/cache-restore + + - name: Install uv + uses: astral-sh/setup-uv@v5 + + - name: Install dependencies + run: pip install pytest pytest-cov + + - name: Run tests + run: uv run pytest --cov --cov-branch --cov-report=xml + + - name: Upload results to Codecov + uses: codecov/codecov-action@v5 + with: + token: ${{ secrets.CODECOV_TOKEN }} + cpp-lint-check: runs-on: ubuntu-latest timeout-minutes: 180 diff --git a/.github/workflows/code-cover.yaml b/.github/workflows/code-cover.yaml deleted file mode 100644 index 6517c257..00000000 --- a/.github/workflows/code-cover.yaml +++ /dev/null @@ -1,31 +0,0 @@ ---- -name: Codecov - -on : [push, pull_request] - -jobs: - test: - name: codecov - runs-on: ubuntu-latest - steps: - - name: Checkout - uses: actions/checkout@v4 - with: - fetch-depth: 2 - - - name: Restore Caches - uses: ./.github/actions/cache-restore - - - name: Install uv - uses: astral-sh/setup-uv@v5 - - - name: Install dependencies - run: pip install pytest pytest-cov - - - name: Run tests - run: uv run pytest --cov --cov-branch --cov-report=xml - - - name: Upload results to Codecov - uses: codecov/codecov-action@v5 - with: - token: ${{ secrets.CODECOV_TOKEN }}