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‎NEWS.md‎

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# gbif.range 1.9.1
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* Fix tiny CRAN compliance regarding examples running time
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* CRAN compliance v3
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# gbif.range 1.9.0
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* Added merge_range()
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* Improved speed of get_range()
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* Corrected cluster convergence bug in get_range()
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* Corrected column error when get_status set with level = "all"
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* Added `merge_range()`
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* Improved speed of `get_range()`
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* Corrected cluster convergence bug in `get_range()`
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* Corrected column error when get_status set with `level = "all"`
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* CRAN compliance v2
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* Corrected documentation
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* Added gbif_have() helper for example run
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* Added `gbif_have()` helper for example run
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# gbif.range 1.8.0
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* Move manuscript plots in a dedicated vignette
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# gbif.range 1.6.3
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* Added pkgdown website.
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* Added Part 0 vignette "Getting Started" with pre-computed figures.
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* Updated all vignettes with pre-computed figures.
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* Updated `README.md`.
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* Updated parameters in `get_gbif()` and `get_status()`.
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* Added pkgdown website
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* Added Part 0 vignette "Getting Started" with pre-computed figures
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* Updated all vignettes with pre-computed figures
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* Updated `README.md`
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* Updated parameters in `get_gbif()` and `get_status()`
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# gbif.range 1.6.2
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* Updated examples and documentation.
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* Updated vignettes.
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* Updated `get_status()`.
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* Corrected example issues and code incompatibility.
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* Updated examples and documentation
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* Updated vignettes
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* Updated `get_status()`
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* Corrected example issues and code incompatibility
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# gbif.range 1.6.1
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* Updated `get_status()`: new `level` parameter.
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* Minor naming fix.
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* Updated `get_gbif()`: new progress bars.
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* Updated `get_status()`: new `level` parameter
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* Minor naming fix
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* Updated `get_gbif()`: new progress bars
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# gbif.range 1.6.0
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* Added disk-based batch workflow for large multi-species GBIF exports:
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`split_gbif_by_species()`, `species_csvs_to_ranges()`, `read_range_rds()`.
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* Added `Collate` field to `DESCRIPTION` for explicit R file load ordering.
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* Added three focused workflow vignettes.
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* Updated `README.md` with Vignettes section.
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`split_gbif_by_species()`, `species_csvs_to_ranges()`, `read_range_rds()`
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* Added `Collate` field to `DESCRIPTION` for explicit R file load ordering
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* Added three focused workflow vignettes
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* Updated `README.md` with Vignettes section
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# gbif.range 1.5.3
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* Improved documentation of package and `get_status()`.
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* Updated `get_gbif()` with new backend support (occ_download parameters)
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* Improved documentation of package and `get_status()`
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* Updated `get_gbif()` with new backend support (`occ_download` parameters)
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# gbif.range 1.5.2
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* Added `area_data`: bundled dataset of `gbif.range`- vs. IUCN-derived range
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area estimates, added alongside new examples mirroring the draft paper plots.
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* Updated test routine.
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* Updated `get_status()`.
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* Updated test routine
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* Updated `get_status()`
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# gbif.range 1.5.1
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* Clarified taxonomic harmonization in `get_gbif()` documentation.
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* Updated `gbif.range` Rd.
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* Clarified taxonomic harmonization in `get_gbif()` documentation
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* Updated `gbif.range` Rd
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# gbif.range 1.5.0
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* Polished documentation and CI.
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* Updated evaluation functions and examples.
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* Added `get_gbif_count()`: estimate record volume before downloading.
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* Changing functions name to: make_ecoreg(), get_ecoreg(),
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check_and_get_ecoreg()
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* Polished documentation and CI
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* Updated evaluation functions and examples
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* Added `get_gbif_count()`: estimate record volume before downloading
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* Changing functions name to: `make_ecoreg()`, `get_ecoreg()`,
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`check_and_get_ecoreg()`
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# gbif.range 1.4.7
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* Added package-level help page.
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* Updated `get_gbif()`.
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* Used `&&` in GBIF status checks.
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* Updated `.gitignore` and `README.md`.
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* Added package-level help page
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* Updated `get_gbif()`
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* Used `&&` in GBIF status checks
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* Updated `.gitignore` and `README.md`
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# gbif.range 1.4.0
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* Added `evaluate_range()`: validate range maps against independent distribution
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data (SDMs, IUCN polygons) with precision, sensitivity, specificity, and TSS.
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data (SDMs, IUCN polygons) with precision, sensitivity, specificity, and TSS
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* Added `cv_range()`: cross-validate a `get_range()` output against its own
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occurrence data using spatial or random folds.
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occurrence data using spatial or random folds
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* Added `make_blocks()`: split observations into balanced random or spatially
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structured folds for cross-validation workflows.
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structured folds for cross-validation workflows
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* Added `area_data`: bundled dataset of `gbif.range`- vs. IUCN-derived range
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area estimates for validation examples.
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area estimates for validation examples
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* Added internal helper functions (`helpers.R`) for argument checking and
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shared utilities across functions.
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shared utilities across functions
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* Introduced formal R5 reference classes `getRange` and `getGBIF` (`classes.R`)
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to store function outputs with their original arguments.
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to store function outputs with their original arguments
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* Added `check_and_get_bioreg()` and `get_bioreg()` as helpers for ecoregion
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download and caching.
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download and caching
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# gbif.range 1.1.0
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* Added `make_ecoregion()`: build custom ecoregion layers from environmental
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rasters via k-means clustering.
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rasters via k-means clustering
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* Moved dependencies from `Depends` to `Imports` for cleaner namespace handling.
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* Added `sf` and `cluster` as dependencies.
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* Added `sf` and `cluster` as dependencies
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* Expanded `get_range()` with additional ecoregion flexibility and resolution
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control via the `res` argument.
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control via the `res` argument
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# gbif.range 1.0.0
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* First stable release under the name `gbif.range` on GitHub.
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* Full migration from `raster` to `terra` (SpatRaster/SpatVector compatibility).
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* First stable release under the name `gbif.range` on GitHub
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* Full migration from `raster` to `terra` (SpatRaster/SpatVector compatibility)
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* Renamed `get_taxonomy()` to `get_status()`: added IUCN Red List status
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retrieval and infra-specific taxa (subspecies, varieties) lookup.
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* Improved `get_gbif()` synonym handling and tiling robustness.
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* Added `read_ecoreg()` and `ecoreg_list` for bundled ecoregion management.
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retrieval and infra-specific taxa (subspecies, varieties) lookup
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* Improved `get_gbif()` synonym handling and tiling robustness
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* Added `read_ecoreg()` and `ecoreg_list` for bundled ecoregion management
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# gbif.range 0.2.0
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* Renamed package from `wsl.gbif` to `gbif.range`.
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* Same for function containing 'wsl': wsl_doi() to get_doi(), wsl_gbif() to
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get_gbif, wsl_obs_filter() to obs_filter()
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* Added `get_range()`: ecoregion-constrained species range inference.
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* Added `conv_function()`: internal polygon builder used by `get_range()`.
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* Renamed package from `wsl.gbif` to `gbif.range`
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* Same for function containing 'wsl': `wsl_doi()` to `get_doi()`, `wsl_gbif()` to
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`get_gbif()`, `wsl_obs_filter()` to `obs_filter()`
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* Added `get_range()`: ecoregion-constrained species range inference
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* Added `conv_function()`: internal polygon builder used by `get_range()`
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* Added `get_taxonomy()` (later renamed `get_status()`): GBIF backbone
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taxonomy inspection including accepted names and synonyms.
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taxonomy inspection including accepted names and synonyms
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* Expanded `get_gbif()` with dynamic moving-window tiling for > 100,000
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records and improved synonym-aware downloads.
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* Added `ClusterR`, `FNN`, `geometry`, `mclust`, and `rgeos` as dependencies.
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records and improved synonym-aware downloads
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* Added `ClusterR`, `FNN`, `geometry`, `mclust`, and `rgeos` as dependencies
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# wsl.gbif 0.1.0
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* First release under the name `wsl.gbif` (October 2022), hosted on EnviDat
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(10.16904/envidat.352) and GitHub (https://github.com/8Ginette8/wsl.gbif).
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* First release under the name `wsl.gbif()` (October 2022), hosted on EnviDat
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(10.16904/envidat.352) and GitHub (https://github.com/8Ginette8/wsl.gbif)
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* Core functions: `wsl_gbif()` (occurrence download with synonym support),
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`wsl_obs_filter()` (grid-based occurrence thinning), `wsl_taxonomy()`
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(GBIF backbone taxonomy lookup), `wsl_doi()` (GBIF-derived DOI generation),
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`make_tiles()` (geographic tiling for `rgbif`).
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`make_tiles()` (geographic tiling for `rgbif`)
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* Credential-free GBIF download with 13 post-processing filters via
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`CoordinateCleaner`.
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`CoordinateCleaner`
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* Dynamic moving-window tiling for datasets exceeding 100,000 observations.

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