Programas

mkdir programas ; cd programas ; wget https://ftp.ncbi.nlm.nih.gov/blast/executables/LATEST/ncbi-blast-2.17.0+-x64-linux.tar.gz ; tar zxvpf ncbi-blast-2.17.0+-x64-linux.tar.gz ; wget https://mafft.cbrc.jp/alignment/software/mafft-7.526-linux.tgz ; tar xfzv mafft-7.526-linux.tgz ;  wget https://github.com/iqtree/iqtree3/releases/download/v3.1.4/iqtree-3.1.4-Linux.tar.gz ; tar zxvpf iqtree-3.1.4-Linux.tar.gz ; ls wget http://opengene.org/fastp/fastp ; chmod a+x ./fastp ; curl --proto '=https' --tlsv1.2 -LsSf https://github.com/COMBINE-lab/salmon/releases/latest/download/salmon-cli-installer.sh | sh ; mv /home/lbrito/.cargo/bin/salmon . ; https://github.com/shenwei356/seqkit/releases/download/v2.14.0/seqkit_linux_amd64.tar.gz ; tar zxvpf seqkit_linux_amd64.tar.gz ; git clone https://github.com/lh3/bwa.git ; cd bwa; make ; cd .. ; wget https://github.com/samtools/samtools/releases/download/1.24/samtools-1.24.tar.bz2 ; tar -xjf samtools-1.24.tar.bz2 ; cd samtools-1.24/ ; ./configure --prefix=$PWD/ ; make ; make install ; cd .. ; ls